Salzman J - Search Results

1

OASIS: An interpretable, finite-sample valid alternative to Pearson's X² for scientific discovery.

Baharav TZ, Tse D, Salzman J. Baharav TZ, et al. Among authors: salzman j. Proc Natl Acad Sci U S A. 2024 Apr 9;121(15):e2304671121. doi: 10.1073/pnas.2304671121. Epub 2024 Apr 2. Proc Natl Acad Sci U S A. 2024. PMID: 38564640 Free PMC article.

2

OASIS: An interpretable, finite-sample valid alternative to Pearson's

X^{2}

for scientific discovery.

Baharav TZ, Tse D, Salzman J. Baharav TZ, et al. Among authors: salzman j. bioRxiv [Preprint]. 2023 Nov 3:2023.03.16.533008. doi: 10.1101/2023.03.16.533008. bioRxiv. 2023. Update in: Proc Natl Acad Sci U S A. 2024 Apr 9;121(15):e2304671121. doi: 10.1073/pnas.2304671121 PMID: 37961606 Free PMC article. Updated. Preprint.

3

SPLASH: A statistical, reference-free genomic algorithm unifies biological discovery.

Chaung K, Baharav TZ, Henderson G, Zheludev IN, Wang PL, Salzman J. Chaung K, et al. Among authors: salzman j. Cell. 2023 Dec 7;186(25):5440-5456.e26. doi: 10.1016/j.cell.2023.10.028. Cell. 2023. PMID: 38065078 Free PMC article.

4

SPLASH: a statistical, reference-free genomic algorithm unifies biological discovery.

Chaung K, Baharav TZ, Henderson G, Zheludev IN, Wang PL, Salzman J. Chaung K, et al. Among authors: salzman j. bioRxiv [Preprint]. 2023 Jul 31:2022.06.24.497555. doi: 10.1101/2022.06.24.497555. bioRxiv. 2023. Update in: Cell. 2023 Dec 7;186(25):5440-5456.e26. doi: 10.1016/j.cell.2023.10.028 PMID: 35794890 Free PMC article. Updated. Preprint.

5

SPLASH2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing reads.

Kokot M, Dehghannasiri R, Baharav T, Salzman J, Deorowicz S. Kokot M, et al. Among authors: salzman j. bioRxiv [Preprint]. 2024 Mar 30:2023.03.17.533189. doi: 10.1101/2023.03.17.533189. bioRxiv. 2024. Update in: Nat Biotechnol. 2024 Sep 23. doi: 10.1038/s41587-024-02381-2 PMID: 36993432 Free PMC article. Updated. Preprint.

6

DIVE: a reference-free statistical approach to diversity-generating and mobile genetic element discovery.

Abante J, Wang PL, Salzman J. Abante J, et al. Among authors: salzman j. Genome Biol. 2023 Oct 20;24(1):240. doi: 10.1186/s13059-023-03038-0. Genome Biol. 2023. PMID: 37864197 Free PMC article.

7

Discovery of gene regulatory elements through a new bioinformatics analysis of haploid genetic screens.

Patel BB, Lebensohn AM, Pusapati GV, Carette JE, Salzman J, Rohatgi R. Patel BB, et al. Among authors: salzman j. PLoS One. 2019 Jan 29;14(1):e0198463. doi: 10.1371/journal.pone.0198463. eCollection 2019. PLoS One. 2019. PMID: 30695034 Free PMC article.

8

RNA splicing programs define tissue compartments and cell types at single-cell resolution.

Olivieri JE, Dehghannasiri R, Wang PL, Jang S, de Morree A, Tan SY, Ming J, Ruohao Wu A; Tabula Sapiens Consortium; Quake SR, Krasnow MA, Salzman J. Olivieri JE, et al. Among authors: salzman j. Elife. 2021 Sep 13;10:e70692. doi: 10.7554/eLife.70692. Elife. 2021. PMID: 34515025 Free PMC article.

9

Hyperammonemia after capecitabine associated with occult impairment of the urea cycle.

Chu G, Salzman J. Chu G, et al. Among authors: salzman j. Cancer Med. 2019 May;8(5):1996-2004. doi: 10.1002/cam4.2036. Epub 2019 Apr 11. Cancer Med. 2019. PMID: 30977266 Free PMC article.

10

Analysis of RNA processing directly from spatial transcriptomics data reveals previously unknown regulation.

Olivieri J, Salzman J. Olivieri J, et al. Among authors: salzman j. bioRxiv [Preprint]. 2023 Mar 14:2023.03.13.532412. doi: 10.1101/2023.03.13.532412. bioRxiv. 2023. PMID: 36993757 Free PMC article. Preprint.

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