Tse D - Search Results

1

OASIS: An interpretable, finite-sample valid alternative to Pearson's X² for scientific discovery.

Baharav TZ, Tse D, Salzman J. Baharav TZ, et al. Among authors: tse d. Proc Natl Acad Sci U S A. 2024 Apr 9;121(15):e2304671121. doi: 10.1073/pnas.2304671121. Epub 2024 Apr 2. Proc Natl Acad Sci U S A. 2024. PMID: 38564640 Free PMC article.

2

OASIS: An interpretable, finite-sample valid alternative to Pearson's

X^{2}

for scientific discovery.

Baharav TZ, Tse D, Salzman J. Baharav TZ, et al. Among authors: tse d. bioRxiv [Preprint]. 2023 Nov 3:2023.03.16.533008. doi: 10.1101/2023.03.16.533008. bioRxiv. 2023. Update in: Proc Natl Acad Sci U S A. 2024 Apr 9;121(15):e2304671121. doi: 10.1073/pnas.2304671121 PMID: 37961606 Free PMC article. Updated. Preprint.

3

Spectral Jaccard Similarity: A New Approach to Estimating Pairwise Sequence Alignments.

Baharav TZ, Kamath GM, Tse DN, Shomorony I. Baharav TZ, et al. Patterns (N Y). 2020 Jul 31;1(6):100081. doi: 10.1016/j.patter.2020.100081. eCollection 2020 Sep 11. Patterns (N Y). 2020. PMID: 33205128 Free PMC article.

4

Optimal compressed representation of high throughput sequence data via light assembly.

Ginart AA, Hui J, Zhu K, Numanagić I, Courtade TA, Sahinalp SC, Tse DN. Ginart AA, et al. Nat Commun. 2018 Feb 8;9(1):566. doi: 10.1038/s41467-017-02480-6. Nat Commun. 2018. PMID: 29422526 Free PMC article.

5

HINGE: long-read assembly achieves optimal repeat resolution.

Kamath GM, Shomorony I, Xia F, Courtade TA, Tse DN. Kamath GM, et al. Genome Res. 2017 May;27(5):747-756. doi: 10.1101/gr.216465.116. Epub 2017 Mar 20. Genome Res. 2017. PMID: 28320918 Free PMC article.

6

Large dataset enables prediction of repair after CRISPR-Cas9 editing in primary T cells.

Leenay RT, Aghazadeh A, Hiatt J, Tse D, Roth TL, Apathy R, Shifrut E, Hultquist JF, Krogan N, Wu Z, Cirolia G, Canaj H, Leonetti MD, Marson A, May AP, Zou J. Leenay RT, et al. Among authors: tse d. Nat Biotechnol. 2019 Sep;37(9):1034-1037. doi: 10.1038/s41587-019-0203-2. Epub 2019 Jul 29. Nat Biotechnol. 2019. PMID: 31359007 Free PMC article.

7

Information-optimal genome assembly via sparse read-overlap graphs.

Shomorony I, Kim SH, Courtade TA, Tse DN. Shomorony I, et al. Bioinformatics. 2016 Sep 1;32(17):i494-i502. doi: 10.1093/bioinformatics/btw450. Bioinformatics. 2016. PMID: 27587667

8

An interpretable framework for clustering single-cell RNA-Seq datasets.

Zhang JM, Fan J, Fan HC, Rosenfeld D, Tse DN. Zhang JM, et al. Among authors: tse dn. BMC Bioinformatics. 2018 Mar 9;19(1):93. doi: 10.1186/s12859-018-2092-7. BMC Bioinformatics. 2018. PMID: 29523077 Free PMC article.

9

Valid Post-clustering Differential Analysis for Single-Cell RNA-Seq.

Zhang JM, Kamath GM, Tse DN. Zhang JM, et al. Cell Syst. 2019 Oct 23;9(4):383-392.e6. doi: 10.1016/j.cels.2019.07.012. Epub 2019 Sep 11. Cell Syst. 2019. PMID: 31521605 Free PMC article.

10

Novel probabilistic models of spatial genetic ancestry with applications to stratification correction in genome-wide association studies.

Bhaskar A, Javanmard A, Courtade TA, Tse D. Bhaskar A, et al. Among authors: tse d. Bioinformatics. 2017 Mar 15;33(6):879-885. doi: 10.1093/bioinformatics/btw720. Bioinformatics. 2017. PMID: 28025204 Free PMC article.

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