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Page 1
Bento: a toolkit for subcellular analysis of spatial transcriptomics data.
Mah CK, Ahmed N, Lopez NA, Lam DC, Pong A, Monell A, Kern C, Han Y, Prasad G, Cesnik AJ, Lundberg E, Zhu Q, Carter H, Yeo GW. Mah CK, et al. Among authors: lundberg e. Genome Biol. 2024 Apr 2;25(1):82. doi: 10.1186/s13059-024-03217-7. Genome Biol. 2024. PMID: 38566187 Free PMC article.
Harmonizing the Generation and Pre-publication Stewardship of FAIR bioimage data.
Bialy N, Alber F, Andrews B, Angelo M, Beliveau B, Bintu L, Boettiger A, Boehm U, Brown CM, Maina MB, Chambers JJ, Cimini BA, Eliceiri K, Errington R, Faklaris O, Gaudreault N, Germain RN, Goscinski W, Grunwald D, Halter M, Hanein D, Hickey JW, Lacoste J, Laude A, Lundberg E, Ma J, Malacrida L, Moore J, Nelson G, Neumann EK, Nitschke R, Onami S, Pimentel JA, Plant AL, Radtke AJ, Sabata B, Schapiro D, Schöneberg J, Spraggins JM, Sudar D, Vierdag WAM, Volkmann N, Wählby C, Wang SS, Yaniv Z, Strambio-De-Castillia C. Bialy N, et al. Among authors: lundberg e. ArXiv [Preprint]. 2024 Aug 30:arXiv:2401.13022v5. ArXiv. 2024. PMID: 38351940 Free PMC article. Preprint.
How to build the virtual cell with artificial intelligence: Priorities and opportunities.
Bunne C, Roohani Y, Rosen Y, Gupta A, Zhang X, Roed M, Alexandrov T, AlQuraishi M, Brennan P, Burkhardt DB, Califano A, Cool J, Dernburg AF, Ewing K, Fox EB, Haury M, Herr AE, Horvitz E, Hsu PD, Jain V, Johnson GR, Kalil T, Kelley DR, Kelley SO, Kreshuk A, Mitchison T, Otte S, Shendure J, Sofroniew NJ, Theis F, Theodoris CV, Upadhyayula S, Valer M, Wang B, Xing E, Yeung-Levy S, Zitnik M, Karaletsos T, Regev A, Lundberg E, Leskovec J, Quake SR. Bunne C, et al. Among authors: lundberg e. Cell. 2024 Dec 12;187(25):7045-7063. doi: 10.1016/j.cell.2024.11.015. Cell. 2024. PMID: 39672099 Free article. Review.
Circular Engineered Sortase for Interrogating Histone H3 in Chromatin.
Whedon SD, Lee K, Wang ZA, Zahn E, Lu C, Yapa Abeywardana M, Fairall L, Nam E, DuBois-Coyne S, De Ioannes P, Sheng X, Andrei A, Lundberg E, Jiang J, Armache KJ, Zhao Y, Schwabe JWR, Wu M, Garcia BA, Cole PA. Whedon SD, et al. Among authors: lundberg e. J Am Chem Soc. 2024 Dec 11;146(49):33914-33927. doi: 10.1021/jacs.4c12585. Epub 2024 Nov 25. J Am Chem Soc. 2024. PMID: 39585806 Free PMC article.
A PERTURBATION CELL ATLAS OF HUMAN INDUCED PLURIPOTENT STEM CELLS.
Nourreddine S, Doctor Y, Dailamy A, Forget A, Lee YH, Chinn B, Khaliq H, Polacco B, Muralidharan M, Pan E, Zhang Y, Sigaeva A, Hansen JN, Gao J, Parker JA, Obernier K, Clark T, Chen JY, Metallo C, Lundberg E, Ideker T, Krogan N, Mali P. Nourreddine S, et al. Among authors: lundberg e. bioRxiv [Preprint]. 2024 Nov 4:2024.11.03.621734. doi: 10.1101/2024.11.03.621734. bioRxiv. 2024. PMID: 39574586 Free PMC article. Preprint.
High-parametric protein maps reveal the spatial organization in early-developing human lung.
Sariyar S, Sountoulidis A, Hansen JN, Marco Salas S, Mardamshina M, Martinez Casals A, Ballllosera Navarro F, Andrusivova Z, Li X, Czarnewski P, Lundeberg J, Linnarsson S, Nilsson M, Sundström E, Samakovlis C, Lundberg E, Ayoglu B. Sariyar S, et al. Among authors: lundberg e. Nat Commun. 2024 Oct 30;15(1):9381. doi: 10.1038/s41467-024-53752-x. Nat Commun. 2024. PMID: 39477961 Free PMC article.
How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities.
Bunne C, Roohani Y, Rosen Y, Gupta A, Zhang X, Roed M, Alexandrov T, AlQuraishi M, Brennan P, Burkhardt DB, Califano A, Cool J, Dernburg AF, Ewing K, Fox EB, Haury M, Herr AE, Horvitz E, Hsu PD, Jain V, Johnson GR, Kalil T, Kelley DR, Kelley SO, Kreshuk A, Mitchison T, Otte S, Shendure J, Sofroniew NJ, Theis F, Theodoris CV, Upadhyayula S, Valer M, Wang B, Xing E, Yeung-Levy S, Zitnik M, Karaletsos T, Regev A, Lundberg E, Leskovec J, Quake SR. Bunne C, et al. Among authors: lundberg e. ArXiv [Preprint]. 2024 Oct 14:arXiv:2409.11654v2. ArXiv. 2024. Update in: Cell. 2024 Dec 12;187(25):7045-7063. doi: 10.1016/j.cell.2024.11.015 PMID: 39398201 Free PMC article. Updated. Preprint.
A circular engineered sortase for interrogating histone H3 in chromatin.
Whedon SD, Lee K, Wang ZA, Zahn E, Lu C, Yapa-Abeywardana M, Fairall L, Nam E, Dubois-Coyne S, Ioannes P, Sheng X, Andrei A, Lundberg E, Jiang J, Armache KJ, Zhao Y, Schwabe JWR, Wu M, Garcia BA, Cole PA. Whedon SD, et al. Among authors: lundberg e. bioRxiv [Preprint]. 2024 Sep 10:2024.09.10.612318. doi: 10.1101/2024.09.10.612318. bioRxiv. 2024. Update in: J Am Chem Soc. 2024 Dec 11;146(49):33914-33927. doi: 10.1021/jacs.4c12585 PMID: 39372790 Free PMC article. Updated. Preprint.
261 results