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Ten simple rules for good model-sharing practices.
Kherroubi Garcia I, Erdmann C, Gesing S, Barton M, Cadwallader L, Hengeveld G, Kirkpatrick CR, Knight K, Lemmen C, Ringuette R, Zhan Q, Harrison M, Mac Gabhann F, Meyers N, Osborne C, Till C, Brenner P, Buys M, Chen M, Lee A, Papin J, Rao Y. Kherroubi Garcia I, et al. Among authors: papin j. PLoS Comput Biol. 2025 Jan 10;21(1):e1012702. doi: 10.1371/journal.pcbi.1012702. eCollection 2025 Jan. PLoS Comput Biol. 2025. PMID: 39792790 Free PMC article.
Applying a polysaccharide lyase from Stenotrophomonas maltophilia to disrupt alginate exopolysaccharide produced by Pseudomonas aeruginosa clinical isolates.
Felton SM, Akula N, Kolling GL, Azadi P, Black I, Kumar A, Heiss C, Capobianco J, Uknalis J, Papin JA, Berger BW. Felton SM, et al. Among authors: papin ja. Appl Environ Microbiol. 2024 Dec 13:e0185324. doi: 10.1128/aem.01853-24. Online ahead of print. Appl Environ Microbiol. 2024. PMID: 39670718 Free article.
Celebrating a body of work.
Papin JA, Mac Gabhann F, Pitzer VE. Papin JA, et al. PLoS Comput Biol. 2024 Sep 26;20(9):e1012441. doi: 10.1371/journal.pcbi.1012441. eCollection 2024 Sep. PLoS Comput Biol. 2024. PMID: 39325699 Free PMC article. No abstract available.
CD151 Maintains Endolysosomal Protein Quality to Inhibit Vascular Inflammation.
Chen J, Ding Y, Jiang C, Qu R, Wren JD, Georgescu C, Wang X, Reuter DN, Liu B, Giles CB, Mayr CH, Schiller HB, Dai J, Stipp CS, Subramaniyan B, Wang J, Zuo H, Huang C, Fung KM, Rice HC, Sonnenberg A, Wu D, Walters MS, Zhao YY, Kanie T, Hays FA, Papin JF, Wang DW, Zhang XA. Chen J, et al. Among authors: papin jf. Circ Res. 2024 May 10;134(10):1330-1347. doi: 10.1161/CIRCRESAHA.123.323190. Epub 2024 Apr 1. Circ Res. 2024. PMID: 38557119
Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism.
Dougherty BV, Moore CJ, Rawls KD, Jenior ML, Chun B, Nagdas S, Saucerman JJ, Kolling GL, Wallqvist A, Papin JA. Dougherty BV, et al. Among authors: papin ja. PLoS Comput Biol. 2024 Feb 29;20(2):e1011919. doi: 10.1371/journal.pcbi.1011919. eCollection 2024 Feb. PLoS Comput Biol. 2024. PMID: 38422168 Free PMC article.
260 results