Swaney DL - Search Results

1

ATG7(2) Interacts With Metabolic Proteins and Regulates Central Energy Metabolism.

Ostacolo K, López García de Lomana A, Larat C, Hjaltalin V, Holm KY, Hlynsdóttir SS, Soucheray M, Sooman L, Rolfsson O, Krogan NJ, Steingrimsson E, Swaney DL, Ogmundsdottir MH. Ostacolo K, et al. Among authors: swaney dl. Traffic. 2024 Apr;25(4):e12933. doi: 10.1111/tra.12933. Traffic. 2024. PMID: 38600522 Free PMC article.

2

Proteomic Analysis of Protein Posttranslational Modifications by Mass Spectrometry.

Swaney DL, Villén J. Swaney DL, et al. Cold Spring Harb Protoc. 2016 Mar 1;2016(3):pdb.top077743. doi: 10.1101/pdb.top077743. Cold Spring Harb Protoc. 2016. PMID: 26933252

3

Phosphoproteomics for the masses.

Grimsrud PA, Swaney DL, Wenger CD, Beauchene NA, Coon JJ. Grimsrud PA, et al. Among authors: swaney dl. ACS Chem Biol. 2010 Jan 15;5(1):105-19. doi: 10.1021/cb900277e. ACS Chem Biol. 2010. PMID: 20047291 Free PMC article. Review.

4

Toward defining the phosphoproteome of Xenopus laevis embryos.

McGivern JV, Swaney DL, Coon JJ, Sheets MD. McGivern JV, et al. Among authors: swaney dl. Dev Dyn. 2009 Jun;238(6):1433-43. doi: 10.1002/dvdy.21941. Dev Dyn. 2009. PMID: 19384857 Free PMC article.

5

Evolution of protein phosphorylation across 18 fungal species.

Studer RA, Rodriguez-Mias RA, Haas KM, Hsu JI, Viéitez C, Solé C, Swaney DL, Stanford LB, Liachko I, Böttcher R, Dunham MJ, de Nadal E, Posas F, Beltrao P, Villén J. Studer RA, et al. Among authors: swaney dl. Science. 2016 Oct 14;354(6309):229-232. doi: 10.1126/science.aaf2144. Science. 2016. PMID: 27738172

6

Multi-scale photocatalytic proximity labeling reveals cell surface neighbors on and between cells.

Lin Z, Schaefer K, Lui I, Yao Z, Fossati A, Swaney DL, Palar A, Sali A, Wells JA. Lin Z, et al. Among authors: swaney dl. bioRxiv [Preprint]. 2023 Oct 29:2023.10.28.564055. doi: 10.1101/2023.10.28.564055. bioRxiv. 2023. Update in: Science. 2024 Jul 19;385(6706):eadl5763. doi: 10.1126/science.adl5763. PMID: 37961561 Free PMC article. Updated. Preprint.

7

Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry.

Swaney DL, Wenger CD, Thomson JA, Coon JJ. Swaney DL, et al. Proc Natl Acad Sci U S A. 2009 Jan 27;106(4):995-1000. doi: 10.1073/pnas.0811964106. Epub 2009 Jan 14. Proc Natl Acad Sci U S A. 2009. PMID: 19144917 Free PMC article.

8

A new probabilistic database search algorithm for ETD spectra.

Sadygov RG, Good DM, Swaney DL, Coon JJ. Sadygov RG, et al. Among authors: swaney dl. J Proteome Res. 2009 Jun;8(6):3198-205. doi: 10.1021/pr900153b. J Proteome Res. 2009. PMID: 19354237 Free PMC article.

9

Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications.

Wilburn DB, Shannon AE, Spicer V, Richards AL, Yeung D, Swaney DL, Krokhin OV, Searle BC. Wilburn DB, et al. Among authors: swaney dl. bioRxiv [Preprint]. 2023 Jun 2:2023.05.30.542978. doi: 10.1101/2023.05.30.542978. bioRxiv. 2023. PMID: 37398395 Free PMC article. Preprint.

10

Systematic functional prioritization of protein posttranslational modifications.

Beltrao P, Albanèse V, Kenner LR, Swaney DL, Burlingame A, Villén J, Lim WA, Fraser JS, Frydman J, Krogan NJ. Beltrao P, et al. Among authors: swaney dl. Cell. 2012 Jul 20;150(2):413-25. doi: 10.1016/j.cell.2012.05.036. Cell. 2012. PMID: 22817900 Free PMC article.

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