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The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars.
Salojärvi J, Rambani A, Yu Z, Guyot R, Strickler S, Lepelley M, Wang C, Rajaraman S, Rastas P, Zheng C, Muñoz DS, Meidanis J, Paschoal AR, Bawin Y, Krabbenhoft TJ, Wang ZQ, Fleck SJ, Aussel R, Bellanger L, Charpagne A, Fournier C, Kassam M, Lefebvre G, Métairon S, Moine D, Rigoreau M, Stolte J, Hamon P, Couturon E, Tranchant-Dubreuil C, Mukherjee M, Lan T, Engelhardt J, Stadler P, Correia De Lemos SM, Suzuki SI, Sumirat U, Wai CM, Dauchot N, Orozco-Arias S, Garavito A, Kiwuka C, Musoli P, Nalukenge A, Guichoux E, Reinout H, Smit M, Carretero-Paulet L, Filho OG, Braghini MT, Padilha L, Sera GH, Ruttink T, Henry R, Marraccini P, Van de Peer Y, Andrade A, Domingues D, Giuliano G, Mueller L, Pereira LF, Plaisance S, Poncet V, Rombauts S, Sankoff D, Albert VA, Crouzillat D, de Kochko A, Descombes P. Salojärvi J, et al. Among authors: andrade a. Nat Genet. 2024 Apr;56(4):721-731. doi: 10.1038/s41588-024-01695-w. Epub 2024 Apr 15. Nat Genet. 2024. PMID: 38622339 Free PMC article.
Genetic diversity of native and cultivated Ugandan Robusta coffee (Coffea canephora Pierre ex A. Froehner): Climate influences, breeding potential and diversity conservation.
Kiwuka C, Goudsmit E, Tournebize R, de Aquino SO, Douma JC, Bellanger L, Crouzillat D, Stoffelen P, Sumirat U, Legnaté H, Marraccini P, de Kochko A, Andrade AC, Mulumba JW, Musoli P, Anten NPR, Poncet V. Kiwuka C, et al. Among authors: andrade ac. PLoS One. 2021 Feb 8;16(2):e0245965. doi: 10.1371/journal.pone.0245965. eCollection 2021. PLoS One. 2021. PMID: 33556074 Free PMC article.
The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.
Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P. Denoeud F, et al. Among authors: andrade ac. Science. 2014 Sep 5;345(6201):1181-4. doi: 10.1126/science.1255274. Epub 2014 Sep 4. Science. 2014. PMID: 25190796 Free article.
Adaptive potential of Coffea canephora from Uganda in response to climate change.
de Aquino SO, Kiwuka C, Tournebize R, Gain C, Marraccini P, Mariac C, Bethune K, Couderc M, Cubry P, Andrade AC, Lepelley M, Darracq O, Crouzillat D, Anten N, Musoli P, Vigouroux Y, de Kochko A, Manel S, François O, Poncet V. de Aquino SO, et al. Among authors: andrade ac. Mol Ecol. 2022 Mar;31(6):1800-1819. doi: 10.1111/mec.16360. Epub 2022 Feb 1. Mol Ecol. 2022. PMID: 35060228
Lipid transfer proteins in coffee: isolation of Coffea orthologs, Coffea arabica homeologs, expression during coffee fruit development and promoter analysis in transgenic tobacco plants.
Cotta MG, Barros LM, de Almeida JD, de Lamotte F, Barbosa EA, Vieira NG, Alves GS, Vinecky F, Andrade AC, Marraccini P. Cotta MG, et al. Among authors: andrade ac. Plant Mol Biol. 2014 May;85(1-2):11-31. doi: 10.1007/s11103-013-0166-5. Epub 2014 Jan 28. Plant Mol Biol. 2014. PMID: 24469961
RBCS1 expression in coffee: Coffea orthologs, Coffea arabica homeologs, and expression variability between genotypes and under drought stress.
Marraccini P, Freire LP, Alves GS, Vieira NG, Vinecky F, Elbelt S, Ramos HJ, Montagnon C, Vieira LG, Leroy T, Pot D, Silva VA, Rodrigues GC, Andrade AC. Marraccini P, et al. Among authors: andrade ac. BMC Plant Biol. 2011 May 16;11:85. doi: 10.1186/1471-2229-11-85. BMC Plant Biol. 2011. PMID: 21575242 Free PMC article.
Identification of candidate genes for drought tolerance in coffee by high-throughput sequencing in the shoot apex of different Coffea arabica cultivars.
Mofatto LS, Carneiro Fde A, Vieira NG, Duarte KE, Vidal RO, Alekcevetch JC, Cotta MG, Verdeil JL, Lapeyre-Montes F, Lartaud M, Leroy T, De Bellis F, Pot D, Rodrigues GC, Carazzolle MF, Pereira GA, Andrade AC, Marraccini P. Mofatto LS, et al. Among authors: andrade ac. BMC Plant Biol. 2016 Apr 19;16:94. doi: 10.1186/s12870-016-0777-5. BMC Plant Biol. 2016. PMID: 27095276 Free PMC article.
2,719 results