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Effects of selection stringency on the outcomes of directed evolution.
PLoS One. 2024 Oct 14;19(10):e0311438. doi: 10.1371/journal.pone.0311438. eCollection 2024.
PLoS One. 2024.
PMID: 39401192
Free PMC article.
Effects of selection stringency on the outcomes of directed evolution.
Alpay BA, Desai MM.
Alpay BA, et al.
bioRxiv [Preprint]. 2024 Jun 9:2024.06.09.598029. doi: 10.1101/2024.06.09.598029.
bioRxiv. 2024.
PMID: 38895455
Free PMC article.
Preprint.
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Eliciting a single amino acid change by vaccination generates antibody protection against group 1 and group 2 influenza A viruses.
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D.
Ray R, et al. Among authors: alpay ba.
Immunity. 2024 May 14;57(5):1141-1159.e11. doi: 10.1016/j.immuni.2024.03.022. Epub 2024 Apr 25.
Immunity. 2024.
PMID: 38670113
Free PMC article.
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Comparison of TP53 Mutations in Myelodysplasia and Acute Leukemia Suggests Divergent Roles in Initiation and Progression.
Jambhekar A, Ackerman EE, Alpay BA, Lahav G, Lovitch SB.
Jambhekar A, et al. Among authors: alpay ba.
medRxiv [Preprint]. 2023 Sep 5:2023.09.04.23295042. doi: 10.1101/2023.09.04.23295042.
medRxiv. 2023.
PMID: 37732185
Free PMC article.
Preprint.
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Evaluating molecular fingerprint-based models of drug side effects against a statistical control.
Alpay BA, Gosink M, Aguiar D.
Alpay BA, et al.
Drug Discov Today. 2022 Nov;27(11):103364. doi: 10.1016/j.drudis.2022.103364. Epub 2022 Sep 14.
Drug Discov Today. 2022.
PMID: 36115633
Review.
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Combinatorial and statistical prediction of gene expression from haplotype sequence.
Alpay BA, Demetci P, Istrail S, Aguiar D.
Alpay BA, et al.
Bioinformatics. 2020 Jul 1;36(Suppl_1):i194-i202. doi: 10.1093/bioinformatics/btaa318.
Bioinformatics. 2020.
PMID: 32657373
Free PMC article.
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