Cook R - Search Results

1

Nanopore and Illumina sequencing reveal different viral populations from human gut samples.

Cook R, Telatin A, Hsieh SY, Newberry F, Tariq MA, Baker DJ, Carding SR, Adriaenssens EM. Cook R, et al. Microb Genom. 2024 Apr;10(4):001236. doi: 10.1099/mgen.0.001236. Microb Genom. 2024. PMID: 38683195 Free PMC article.

2

Predicting stop codon reassignment improves functional annotation of bacteriophages.

Cook R, Telatin A, Bouras G, Camargo AP, Larralde M, Edwards RA, Adriaenssens EM. Cook R, et al. bioRxiv [Preprint]. 2023 Dec 19:2023.12.19.572299. doi: 10.1101/2023.12.19.572299. bioRxiv. 2023. Update in: ISME Commun. 2024 Jun 19;4(1):ycae079. doi: 10.1093/ismeco/ycae079 PMID: 38187747 Free PMC article. Updated. Preprint.

3

The long and short of it: benchmarking viromics using Illumina, Nanopore and PacBio sequencing technologies.

Cook R, Brown N, Rihtman B, Michniewski S, Redgwell T, Clokie M, Stekel DJ, Chen Y, Scanlan DJ, Hobman JL, Nelson A, Jones MA, Smith D, Millard A. Cook R, et al. Microb Genom. 2024 Feb;10(2):001198. doi: 10.1099/mgen.0.001198. Microb Genom. 2024. PMID: 38376377 Free PMC article.

4

Decoding huge phage diversity: a taxonomic classification of Lak megaphages.

Cook R, Crisci MA, Pye HV, Telatin A, Adriaenssens EM, Santini JM. Cook R, et al. J Gen Virol. 2024 May;105(5):001997. doi: 10.1099/jgv.0.001997. J Gen Virol. 2024. PMID: 38814706 Free PMC article.

5

Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages.

Cook R, Telatin A, Bouras G, Camargo AP, Larralde M, Edwards RA, Adriaenssens EM. Cook R, et al. ISME Commun. 2024 Jun 19;4(1):ycae079. doi: 10.1093/ismeco/ycae079. eCollection 2024 Jan. ISME Commun. 2024. PMID: 38939532 Free PMC article.

6

Phage diversity in One Health.

Pye HV, Krishnamurthi R, Cook R, Adriaenssens EM. Pye HV, et al. Among authors: cook r. Essays Biochem. 2024 Dec 17;68(5):607-619. doi: 10.1042/EBC20240012. Essays Biochem. 2024. PMID: 39475220 Review.

7

Hybrid assembly of an agricultural slurry virome reveals a diverse and stable community with the potential to alter the metabolism and virulence of veterinary pathogens.

Cook R, Hooton S, Trivedi U, King L, Dodd CER, Hobman JL, Stekel DJ, Jones MA, Millard AD. Cook R, et al. Microbiome. 2021 Mar 20;9(1):65. doi: 10.1186/s40168-021-01010-3. Microbiome. 2021. PMID: 33743832 Free PMC article.

8

Viral metagenomics reveals diverse virus-host interactions throughout the soil depth profile.

Muscatt G, Cook R, Millard A, Bending GD, Jameson E. Muscatt G, et al. Among authors: cook r. mBio. 2023 Dec 19;14(6):e0224623. doi: 10.1128/mbio.02246-23. Epub 2023 Nov 30. mBio. 2023. PMID: 38032184 Free PMC article.

9

INfrastructure for a PHAge REference Database: Identification of Large-Scale Biases in the Current Collection of Cultured Phage Genomes.

Cook R, Brown N, Redgwell T, Rihtman B, Barnes M, Clokie M, Stekel DJ, Hobman J, Jones MA, Millard A. Cook R, et al. Phage (New Rochelle). 2021 Dec 1;2(4):214-223. doi: 10.1089/phage.2021.0007. Epub 2021 Dec 16. Phage (New Rochelle). 2021. PMID: 36159887 Free PMC article.

10

A new family of "megaphages" abundant in the marine environment.

Michniewski S, Rihtman B, Cook R, Jones MA, Wilson WH, Scanlan DJ, Millard A. Michniewski S, et al. Among authors: cook r. ISME Commun. 2021 Oct 20;1(1):58. doi: 10.1038/s43705-021-00064-6. ISME Commun. 2021. PMID: 37938293 Free PMC article.

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