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Page 1
Preservation of the fecal microbiome is associated with reduced severity of graft-versus-host disease.
Burgos da Silva M, Ponce DM, Dai A, M Devlin S, Gomes ALC, Moore G, Slingerland J, Shouval R, Armijo GK, DeWolf S, Fei T, Clurman A, Fontana E, Amoretti LA, Wright RJ, Andrlova H, Miltiadous O, Perales MA, Taur Y, Peled JU, van den Brink MRM. Burgos da Silva M, et al. Among authors: fei t. Blood. 2022 Dec 1;140(22):2385-2397. doi: 10.1182/blood.2021015352. Blood. 2022. PMID: 35969834 Free PMC article.
Mitigation of gastrointestinal graft-versus-host disease with tocilizumab prophylaxis is accompanied by preservation of microbial diversity and attenuation of enterococcal domination.
Chhabra S, Szabo A, Clurman A, McShane K, Waters N, Eastwood D, Samanas L, Fei T, Armijo G, Abedin S, Longo W, Hari P, Hamadani M, Shah NN, Runaas L, Jerkins JH, Van den Brink M, Peled JU, Drobyski WR. Chhabra S, et al. Among authors: fei t. Haematologica. 2023 Jan 1;108(1):250-256. doi: 10.3324/haematol.2022.281309. Haematologica. 2023. PMID: 36106394 Free PMC article. No abstract available.
Conditioning Regimens are Associated with Distinct Patterns of Microbiota Injury in Allogeneic Hematopoietic Cell Transplantation.
Shouval R, Waters NR, Gomes ALC, Zuanelli Brambilla C, Fei T, Devlin SM, Nguyen CL, Markey KA, Dai A, Slingerland JB, Clurman AG, Fontana E, Amoretti LA, Wright RJ, Hohl TM, Taur Y, Sung AD, Weber D, Hashimoto D, Teshima T, Chao NJ, Holler E, Scordo M, Giralt SA, Perales MA, Peled JU, van den Brink MRM. Shouval R, et al. Among authors: fei t. Clin Cancer Res. 2023 Jan 4;29(1):165-173. doi: 10.1158/1078-0432.CCR-22-1254. Clin Cancer Res. 2023. PMID: 36322005 Free PMC article.
Enhanced Feature Selection for Microbiome Data using FLORAL: Scalable Log-ratio Lasso Regression.
Fei T, Funnell T, Waters NR, Raj SS, Sadeghi K, Dai A, Miltiadous O, Shouval R, Lv M, Peled JU, Ponce DM, Perales MA, Gönen M, van den Brink MRM. Fei T, et al. bioRxiv [Preprint]. 2023 Dec 18:2023.05.02.538599. doi: 10.1101/2023.05.02.538599. bioRxiv. 2023. Update in: Cell Rep Methods. 2024 Nov 18;4(11):100899. doi: 10.1016/j.crmeth.2024.100899 PMID: 37205350 Free PMC article. Updated. Preprint.
High-resolution analyses of associations between medications, microbiome, and mortality in cancer patients.
Nguyen CL, Markey KA, Miltiadous O, Dai A, Waters N, Sadeghi K, Fei T, Shouval R, Taylor BP, Liao C, Slingerland JB, Slingerland AE, Clurman AG, Maloy MA, Bohannon L, Giardina PA, Brereton DG, Armijo GK, Fontana E, Gradissimo A, Gyurkocza B, Sung AD, Chao NJ, Devlin SM, Taur Y, Giralt SA, Perales MA, Xavier JB, Pamer EG, Peled JU, Gomes ALC, van den Brink MRM. Nguyen CL, et al. Among authors: fei t. Cell. 2023 Jun 8;186(12):2705-2718.e17. doi: 10.1016/j.cell.2023.05.007. Epub 2023 Jun 8. Cell. 2023. PMID: 37295406 Free PMC article.
Tissue-specific features of the T cell repertoire after allogeneic hematopoietic cell transplantation in human and mouse.
DeWolf S, Elhanati Y, Nichols K, Waters NR, Nguyen CL, Slingerland JB, Rodriguez N, Lyudovyk O, Giardina PA, Kousa AI, Andrlová H, Ceglia N, Fei T, Kappagantula R, Li Y, Aleynick N, Baez P, Murali R, Hayashi A, Lee N, Gipson B, Rangesa M, Katsamakis Z, Dai A, Blouin AG, Arcila M, Masilionis I, Chaligne R, Ponce DM, Landau HJ, Politikos I, Tamari R, Hanash AM, Jenq RR, Giralt SA, Markey KA, Zhang Y, Perales MA, Socci ND, Greenbaum BD, Iacobuzio-Donahue CA, Hollmann TJ, van den Brink MRM, Peled JU. DeWolf S, et al. Among authors: fei t. Sci Transl Med. 2023 Jul 26;15(706):eabq0476. doi: 10.1126/scitranslmed.abq0476. Epub 2023 Jul 26. Sci Transl Med. 2023. PMID: 37494469 Free PMC article.
Altered microbial bile acid metabolism exacerbates T cell-driven inflammation during graft-versus-host disease.
Lindner S, Miltiadous O, Ramos RJF, Paredes J, Kousa AI, Dai A, Fei T, Lauder E, Frame J, Waters NR, Sadeghi K, Armijo GK, Ghale R, Victor K, Gipson B, Monette S, Russo MV, Nguyen CL, Slingerland J, Taur Y, Markey KA, Andrlova H, Giralt S, Perales MA, Reddy P, Peled JU, Smith M, Cross JR, Burgos da Silva M, Campbell C, van den Brink MRM. Lindner S, et al. Among authors: fei t. Nat Microbiol. 2024 Mar;9(3):614-630. doi: 10.1038/s41564-024-01617-w. Epub 2024 Mar 1. Nat Microbiol. 2024. PMID: 38429422 Free PMC article.
Sugar-rich foods exacerbate antibiotic-induced microbiome injury.
Dai A, Adintori PA, Funnell T, Jogia WP, Fei T, Waters NR, Rangesa M, Ballweg A, Gipson B, Raj S, Hayase E, Markey KA, Burgos da Silva M, Miltiadous O, Brambilla CZ, Buchan ML, Peets T, Gradissimo A, Smith N, Katsamakis Z, Warren A, Amoretti LA, Duan C, Zhang C, Matheis F, Sullivan AP, Slingerland JB, Clurman A, Brereton DG, Giardina PA, Gomes ALC, Johnson AJ, Knights D, Jenq RR, Perales MA, Giralt SA, Schluter J, van den Brink MRM, Peled J. Dai A, et al. Among authors: fei t. bioRxiv [Preprint]. 2024 Oct 14:2024.10.14.617881. doi: 10.1101/2024.10.14.617881. bioRxiv. 2024. PMID: 39463943 Free PMC article. Preprint.
Scalable log-ratio lasso regression for enhanced microbial feature selection with FLORAL.
Fei T, Funnell T, Waters NR, Raj SS, Baichoo M, Sadeghi K, Dai A, Miltiadous O, Shouval R, Lv M, Peled JU, Ponce DM, Perales MA, Gönen M, van den Brink MRM. Fei T, et al. Cell Rep Methods. 2024 Nov 18;4(11):100899. doi: 10.1016/j.crmeth.2024.100899. Epub 2024 Nov 7. Cell Rep Methods. 2024. PMID: 39515336 Free article.
242 results