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Identification of the shortest species-specific oligonucleotide sequences.
Mouratidis I, Konnaris M, Chantzi N, Chan CSY, Patsakis M, Provatas K, Montgomery A, Baltoumas FA, Sha CM, Mareboina M, Pavlopoulos GA, Chartoumpekis DV, Georgakopoulos-Soares I. Mouratidis I, et al. Among authors: georgakopoulos soares i. Genome Res. 2025 Jan 2:gr.280070.124. doi: 10.1101/gr.280070.124. Online ahead of print. Genome Res. 2025. PMID: 39746719 Free article.
invertiaDB: A Database of Inverted Repeats Across Organismal Genomes.
Provatas K, Chantzi N, Patsakis M, Nayak A, Mouratidis I, Pavlopoulos GA, Georgakopoulos-Soares I. Provatas K, et al. Among authors: georgakopoulos soares i. bioRxiv [Preprint]. 2024 Nov 13:2024.11.11.622808. doi: 10.1101/2024.11.11.622808. bioRxiv. 2024. PMID: 39605716 Free PMC article. Preprint.
Microsatellites explorer: A database of short tandem repeats across genomes.
Provatas K, Chantzi N, Patsakis M, Nayak A, Mouratidis I, Georgakopoulos-Soares I. Provatas K, et al. Among authors: georgakopoulos soares i. Comput Struct Biotechnol J. 2024 Oct 26;23:3817-3826. doi: 10.1016/j.csbj.2024.10.041. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 39525087 Free PMC article.
Zimin patterns in genomes.
Chantzi N, Mouratidis I, Georgakopoulos-Soares I. Chantzi N, et al. Among authors: georgakopoulos soares i. ArXiv [Preprint]. 2024 Oct 16:arXiv:2410.13004v1. ArXiv. 2024. PMID: 39483355 Free PMC article. Preprint.
MAFin: Motif Detection in Multiple Alignment Files.
Patsakis M, Provatas K, Baltoumas FA, Chantzi N, Mouratidis I, Pavlopoulos GA, Georgakopoulos-Soares I. Patsakis M, et al. Among authors: georgakopoulos soares i. ArXiv [Preprint]. 2024 Oct 14:arXiv:2410.11021v1. ArXiv. 2024. PMID: 39483349 Free PMC article. Preprint.
A survey of k-mer methods and applications in bioinformatics.
Moeckel C, Mareboina M, Konnaris MA, Chan CSY, Mouratidis I, Montgomery A, Chantzi N, Pavlopoulos GA, Georgakopoulos-Soares I. Moeckel C, et al. Among authors: georgakopoulos soares i. Comput Struct Biotechnol J. 2024 May 21;23:2289-2303. doi: 10.1016/j.csbj.2024.05.025. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 38840832 Free PMC article. Review.
Visualizing metagenomic and metatranscriptomic data: A comprehensive review.
Aplakidou E, Vergoulidis N, Chasapi M, Venetsianou NK, Kokoli M, Panagiotopoulou E, Iliopoulos I, Karatzas E, Pafilis E, Georgakopoulos-Soares I, Kyrpides NC, Pavlopoulos GA, Baltoumas FA. Aplakidou E, et al. Among authors: georgakopoulos soares i. Comput Struct Biotechnol J. 2024 May 3;23:2011-2033. doi: 10.1016/j.csbj.2024.04.060. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 38765606 Free PMC article. Review.
54 results