Bradley P - Search Results

1

MR1-restricted T cell clonotypes are associated with "resistance" to Mycobacterium tuberculosis infection.

Cross DL, Layton ED, Yu KK, Smith MT, Aguilar MS, Li S, Wilcox EC, Chapuis AG, Mayanja-Kizza H, Stein CM, Boom WH, Hawn TR, Bradley P, Newell EW, Seshadri C. Cross DL, et al. Among authors: bradley p. JCI Insight. 2024 May 8;9(9):e166505. doi: 10.1172/jci.insight.166505. JCI Insight. 2024. PMID: 38716731 Free PMC article.

2

A Diverse Lipid Antigen-Specific TCR Repertoire Is Clonally Expanded during Active Tuberculosis.

DeWitt WS, Yu KKQ, Wilburn DB, Sherwood A, Vignali M, Day CL, Scriba TJ, Robins HS, Swanson WJ, Emerson RO, Bradley PH, Seshadri C. DeWitt WS, et al. J Immunol. 2018 Aug 1;201(3):888-896. doi: 10.4049/jimmunol.1800186. Epub 2018 Jun 18. J Immunol. 2018. PMID: 29914888 Free PMC article.

3

Overcoming immune evasion from post-translational modification of a mutant KRAS epitope to achieve TCR-T cell-mediated antitumor activity.

Lee JW, Chen EY, Hu T, Perret R, Chaffee ME, Martinov T, Mureli S, McCurdy CL, Jones LA, Gafken PR, Chanana P, Su Y, Chapuis AG, Bradley P, Schmitt TM, Greenberg PD. Lee JW, et al. Among authors: bradley p. bioRxiv [Preprint]. 2024 Oct 14:2024.09.18.612965. doi: 10.1101/2024.09.18.612965. bioRxiv. 2024. PMID: 39345486 Free PMC article. Preprint.

4

TCR meta-clonotypes for biomarker discovery with tcrdist3: identification of public, HLA-restricted SARS-CoV-2 associated TCR features.

Mayer-Blackwell K, Schattgen S, Cohen-Lavi L, Crawford JC, Souquette A, Gaevert JA, Hertz T, Thomas PG, Bradley P, Fiore-Gartland A. Mayer-Blackwell K, et al. Among authors: bradley p. bioRxiv [Preprint]. 2021 Mar 19:2020.12.24.424260. doi: 10.1101/2020.12.24.424260. bioRxiv. 2021. Update in: Elife. 2021 Nov 30;10:e68605. doi: 10.7554/eLife.68605 PMID: 33398288 Free PMC article. Updated. Preprint.

5

TCR meta-clonotypes for biomarker discovery with tcrdist3 enabled identification of public, HLA-restricted clusters of SARS-CoV-2 TCRs.

Mayer-Blackwell K, Schattgen S, Cohen-Lavi L, Crawford JC, Souquette A, Gaevert JA, Hertz T, Thomas PG, Bradley P, Fiore-Gartland A. Mayer-Blackwell K, et al. Among authors: bradley p. Elife. 2021 Nov 30;10:e68605. doi: 10.7554/eLife.68605. Elife. 2021. PMID: 34845983 Free PMC article.

6

Neural network models for sequence-based TCR and HLA association prediction.

Liu S, Bradley P, Sun W. Liu S, et al. Among authors: bradley p. PLoS Comput Biol. 2023 Nov 20;19(11):e1011664. doi: 10.1371/journal.pcbi.1011664. eCollection 2023 Nov. PLoS Comput Biol. 2023. PMID: 37983288 Free PMC article.

7

Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity.

DeWitt WS 3rd, Smith A, Schoch G, Hansen JA, Matsen FA 4th, Bradley P. DeWitt WS 3rd, et al. Among authors: bradley p. Elife. 2018 Aug 28;7:e38358. doi: 10.7554/eLife.38358. Elife. 2018. PMID: 30152754 Free PMC article.

8

Convergent clonal selection of donor- and recipient-derived CMV-specific T cells in hematopoietic stem cell transplant patients.

Erickson JR, Stevens-Ayers T, Mair F, Edmison B, Boeckh M, Bradley P, Prlic M. Erickson JR, et al. Among authors: bradley p. Proc Natl Acad Sci U S A. 2022 Feb 8;119(6):e2117031119. doi: 10.1073/pnas.2117031119. Proc Natl Acad Sci U S A. 2022. PMID: 35105810 Free PMC article.

9

Peptide-binding specificity prediction using fine-tuned protein structure prediction networks.

Motmaen A, Dauparas J, Baek M, Abedi MH, Baker D, Bradley P. Motmaen A, et al. Among authors: bradley p. Proc Natl Acad Sci U S A. 2023 Feb 28;120(9):e2216697120. doi: 10.1073/pnas.2216697120. Epub 2023 Feb 21. Proc Natl Acad Sci U S A. 2023. PMID: 36802421 Free PMC article.

10

Microbiota dictate T cell clonal selection to augment graft-versus-host disease after stem cell transplantation.

Yeh AC, Koyama M, Waltner OG, Minnie SA, Boiko JR, Shabaneh TB, Takahashi S, Zhang P, Ensbey KS, Schmidt CR, Legg SRW, Sekiguchi T, Nelson E, Bhise SS, Stevens AR, Goodpaster T, Chakka S, Furlan SN, Markey KA, Bleakley ME, Elson CO, Bradley PH, Hill GR. Yeh AC, et al. Among authors: bradley ph. Immunity. 2024 Jul 9;57(7):1648-1664.e9. doi: 10.1016/j.immuni.2024.05.018. Epub 2024 Jun 13. Immunity. 2024. PMID: 38876098

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