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Page 1
Addendum: Accurate structure prediction of biomolecular interactions with AlphaFold 3.
Abramson J, Adler J, Dunger J, Evans R, Green T, Pritzel A, Ronneberger O, Willmore L, Ballard AJ, Bambrick J, Bodenstein SW, Evans DA, Hung CC, O'Neill M, Reiman D, Tunyasuvunakool K, Wu Z, Žemgulytė A, Arvaniti E, Beattie C, Bertolli O, Bridgland A, Cherepanov A, Congreve M, Cowen-Rivers AI, Cowie A, Figurnov M, Fuchs FB, Gladman H, Jain R, Khan YA, Low CMR, Perlin K, Potapenko A, Savy P, Singh S, Stecula A, Thillaisundaram A, Tong C, Yakneen S, Zhong ED, Zielinski M, Žídek A, Bapst V, Kohli P, Jaderberg M, Hassabis D, Jumper JM. Abramson J, et al. Among authors: tunyasuvunakool k. Nature. 2024 Dec;636(8042):E4. doi: 10.1038/s41586-024-08416-7. Nature. 2024. PMID: 39604737 Free PMC article. No abstract available.
AlphaFold two years on: Validation and impact.
Kovalevskiy O, Mateos-Garcia J, Tunyasuvunakool K. Kovalevskiy O, et al. Among authors: tunyasuvunakool k. Proc Natl Acad Sci U S A. 2024 Aug 20;121(34):e2315002121. doi: 10.1073/pnas.2315002121. Epub 2024 Aug 12. Proc Natl Acad Sci U S A. 2024. PMID: 39133843 Free PMC article.
Accurate structure prediction of biomolecular interactions with AlphaFold 3.
Abramson J, Adler J, Dunger J, Evans R, Green T, Pritzel A, Ronneberger O, Willmore L, Ballard AJ, Bambrick J, Bodenstein SW, Evans DA, Hung CC, O'Neill M, Reiman D, Tunyasuvunakool K, Wu Z, Žemgulytė A, Arvaniti E, Beattie C, Bertolli O, Bridgland A, Cherepanov A, Congreve M, Cowen-Rivers AI, Cowie A, Figurnov M, Fuchs FB, Gladman H, Jain R, Khan YA, Low CMR, Perlin K, Potapenko A, Savy P, Singh S, Stecula A, Thillaisundaram A, Tong C, Yakneen S, Zhong ED, Zielinski M, Žídek A, Bapst V, Kohli P, Jaderberg M, Hassabis D, Jumper JM. Abramson J, et al. Among authors: tunyasuvunakool k. Nature. 2024 Jun;630(8016):493-500. doi: 10.1038/s41586-024-07487-w. Epub 2024 May 8. Nature. 2024. PMID: 38718835 Free PMC article.
AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.
Varadi M, Bertoni D, Magana P, Paramval U, Pidruchna I, Radhakrishnan M, Tsenkov M, Nair S, Mirdita M, Yeo J, Kovalevskiy O, Tunyasuvunakool K, Laydon A, Žídek A, Tomlinson H, Hariharan D, Abrahamson J, Green T, Jumper J, Birney E, Steinegger M, Hassabis D, Velankar S. Varadi M, et al. Among authors: tunyasuvunakool k. Nucleic Acids Res. 2024 Jan 5;52(D1):D368-D375. doi: 10.1093/nar/gkad1011. Nucleic Acids Res. 2024. PMID: 37933859 Free PMC article.
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources.
Varadi M, Nair S, Sillitoe I, Tauriello G, Anyango S, Bienert S, Borges C, Deshpande M, Green T, Hassabis D, Hatos A, Hegedus T, Hekkelman ML, Joosten R, Jumper J, Laydon A, Molodenskiy D, Piovesan D, Salladini E, Salzberg SL, Sommer MJ, Steinegger M, Suhajda E, Svergun D, Tenorio-Ku L, Tosatto S, Tunyasuvunakool K, Waterhouse AM, Žídek A, Schwede T, Orengo C, Velankar S. Varadi M, et al. Among authors: tunyasuvunakool k. Gigascience. 2022 Nov 30;11:giac118. doi: 10.1093/gigascience/giac118. Gigascience. 2022. PMID: 36448847 Free PMC article.
Author Correction: Structure of the PAPP-ABP5 complex reveals mechanism of substrate recognition.
Judge RA, Sridar J, Tunyasuvunakool K, Jain R, Wang JCK, Ouch C, Xu J, Mafi A, Nile AH, Remarcik C, Smith CL, Ghosh C, Xu C, Stoll V, Jumper J, Singh AH, Eaton D, Hao Q. Judge RA, et al. Among authors: tunyasuvunakool k. Nat Commun. 2022 Sep 28;13(1):5694. doi: 10.1038/s41467-022-33522-3. Nat Commun. 2022. PMID: 36171222 Free PMC article. No abstract available.
Structure of the PAPP-ABP5 complex reveals mechanism of substrate recognition.
Judge RA, Sridar J, Tunyasuvunakool K, Jain R, Wang JCK, Ouch C, Xu J, Mafi A, Nile AH, Remarcik C, Smith CL, Ghosh C, Xu C, Stoll V, Jumper J, Singh AH, Eaton D, Hao Q. Judge RA, et al. Among authors: tunyasuvunakool k. Nat Commun. 2022 Sep 20;13(1):5500. doi: 10.1038/s41467-022-33175-2. Nat Commun. 2022. PMID: 36127359 Free PMC article.
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins.
Moi D, Nishio S, Li X, Valansi C, Langleib M, Brukman NG, Flyak K, Dessimoz C, de Sanctis D, Tunyasuvunakool K, Jumper J, Graña M, Romero H, Aguilar PS, Jovine L, Podbilewicz B. Moi D, et al. Among authors: tunyasuvunakool k. Nat Commun. 2022 Jul 6;13(1):3880. doi: 10.1038/s41467-022-31564-1. Nat Commun. 2022. PMID: 35794124 Free PMC article.
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