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Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications.
Acera Mateos P, J Sethi A, Ravindran A, Srivastava A, Woodward K, Mahmud S, Kanchi M, Guarnacci M, Xu J, W S Yuen Z, Zhou Y, Sneddon A, Hamilton W, Gao J, M Starrs L, Hayashi R, Wickramasinghe V, Zarnack K, Preiss T, Burgio G, Dehorter N, E Shirokikh N, Eyras E. Acera Mateos P, et al. Among authors: zarnack k. Nat Commun. 2024 May 9;15(1):3899. doi: 10.1038/s41467-024-47953-7. Nat Commun. 2024. PMID: 38724548 Free PMC article.
mRNA trafficking in fungi.
Zarnack K, Feldbrügge M. Zarnack K, et al. Mol Genet Genomics. 2007 Oct;278(4):347-59. doi: 10.1007/s00438-007-0271-8. Epub 2007 Sep 1. Mol Genet Genomics. 2007. PMID: 17768642 Review.
Disruption of Prostaglandin E2 Signaling in Cancer-Associated Fibroblasts Limits Mammary Carcinoma Growth but Promotes Metastasis.
Elwakeel E, Brüggemann M, Wagih J, Lityagina O, Elewa MAF, Han Y, Frömel T, Popp R, Nicolas AM, Schreiber Y, Gradhand E, Thomas D, Nüsing R, Steinmetz-Späh J, Savai R, Fokas E, Fleming I, Greten FR, Zarnack K, Brüne B, Weigert A. Elwakeel E, et al. Among authors: zarnack k. Cancer Res. 2022 Apr 1;82(7):1380-1395. doi: 10.1158/0008-5472.CAN-21-2116. Cancer Res. 2022. PMID: 35105690
High-throughput approaches in RNA biology.
König J, Zarnack K. König J, et al. Among authors: zarnack k. Methods. 2020 Jun 1;178:1-2. doi: 10.1016/j.ymeth.2020.04.002. Epub 2020 Apr 8. Methods. 2020. PMID: 32278015 No abstract available.
The posttranscriptional machinery of Ustilago maydis.
Feldbrügge M, Zarnack K, Vollmeister E, Baumann S, Koepke J, König J, Münsterkötter M, Mannhaupt G. Feldbrügge M, et al. Among authors: zarnack k. Fungal Genet Biol. 2008 Aug;45 Suppl 1:S40-6. doi: 10.1016/j.fgb.2008.03.013. Epub 2008 Mar 31. Fungal Genet Biol. 2008. PMID: 18468465 Review.
iCLIP predicts the dual splicing effects of TIA-RNA interactions.
Wang Z, Kayikci M, Briese M, Zarnack K, Luscombe NM, Rot G, Zupan B, Curk T, Ule J. Wang Z, et al. Among authors: zarnack k. PLoS Biol. 2010 Oct 26;8(10):e1000530. doi: 10.1371/journal.pbio.1000530. PLoS Biol. 2010. PMID: 21048981 Free PMC article.
79 results