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Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications.
Acera Mateos P, J Sethi A, Ravindran A, Srivastava A, Woodward K, Mahmud S, Kanchi M, Guarnacci M, Xu J, W S Yuen Z, Zhou Y, Sneddon A, Hamilton W, Gao J, M Starrs L, Hayashi R, Wickramasinghe V, Zarnack K, Preiss T, Burgio G, Dehorter N, E Shirokikh N, Eyras E. Acera Mateos P, et al. Among authors: zhou y. Nat Commun. 2024 May 9;15(1):3899. doi: 10.1038/s41467-024-47953-7. Nat Commun. 2024. PMID: 38724548 Free PMC article.
Deep and accurate detection of m6A RNA modifications using miCLIP2 and m6Aboost machine learning.
Körtel N, Rücklé C, Zhou Y, Busch A, Hoch-Kraft P, Sutandy FXR, Haase J, Pradhan M, Musheev M, Ostareck D, Ostareck-Lederer A, Dieterich C, Hüttelmaier S, Niehrs C, Rausch O, Dominissini D, König J, Zarnack K. Körtel N, et al. Among authors: zhou y. Nucleic Acids Res. 2021 Sep 20;49(16):e92. doi: 10.1093/nar/gkab485. Nucleic Acids Res. 2021. PMID: 34157120 Free PMC article.
RNA stability controlled by m6A methylation contributes to X-to-autosome dosage compensation in mammals.
Rücklé C, Körtel N, Basilicata MF, Busch A, Zhou Y, Hoch-Kraft P, Tretow K, Kielisch F, Bertin M, Pradhan M, Musheev M, Schweiger S, Niehrs C, Rausch O, Zarnack K, Keller Valsecchi CI, König J. Rücklé C, et al. Among authors: zhou y. Nat Struct Mol Biol. 2023 Aug;30(8):1207-1215. doi: 10.1038/s41594-023-00997-7. Epub 2023 May 18. Nat Struct Mol Biol. 2023. PMID: 37202476 Free PMC article.
Author Correction: RNA stability controlled by m6A methylation contributes to X-to-autosome dosage compensation in mammals.
Rücklé C, Körtel N, Basilicata MF, Busch A, Zhou Y, Hoch-Kraft P, Tretow K, Kielisch F, Bertin M, Pradhan M, Musheev M, Schweiger S, Niehrs C, Rausch O, Zarnack K, Keller Valsecchi CI, König J. Rücklé C, et al. Among authors: zhou y. Nat Struct Mol Biol. 2023 Oct;30(10):1607. doi: 10.1038/s41594-023-01053-0. Nat Struct Mol Biol. 2023. PMID: 37415011 Free PMC article. No abstract available.
m6A sites in the coding region trigger translation-dependent mRNA decay.
Zhou Y, Ćorović M, Hoch-Kraft P, Meiser N, Mesitov M, Körtel N, Back H, Naarmann-de Vries IS, Katti K, Obrdlík A, Busch A, Dieterich C, Vaňáčová Š, Hengesbach M, Zarnack K, König J. Zhou Y, et al. Mol Cell. 2024 Dec 5;84(23):4576-4593.e12. doi: 10.1016/j.molcel.2024.10.033. Epub 2024 Nov 21. Mol Cell. 2024. PMID: 39577428 Free article.
Exploration of the feasibility of clinical application of phage treatment for multidrug-resistant Serratia marcescens-induced pulmonary infection.
Duan X, Liu W, Xiao Y, Rao M, Ji L, Wan X, Han S, Lin Z, Liu H, Chen P, Qiao K, Zheng M, Shen J, Zhou Y, Asakawa T, Xiao M, Lu H. Duan X, et al. Among authors: zhou y. Emerg Microbes Infect. 2025 Jan 7:2451048. doi: 10.1080/22221751.2025.2451048. Online ahead of print. Emerg Microbes Infect. 2025. PMID: 39764739
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