Ohta T - Search Results

1

ChIP-Atlas 3.0: a data-mining suite to explore chromosome architecture together with large-scale regulome data.

Zou Z, Ohta T, Oki S. Zou Z, et al. Among authors: ohta t. Nucleic Acids Res. 2024 Jul 5;52(W1):W45-W53. doi: 10.1093/nar/gkae358. Nucleic Acids Res. 2024. PMID: 38749504 Free PMC article.

2

Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data.

Kawakami E, Nakaoka S, Ohta T, Kitano H. Kawakami E, et al. Among authors: ohta t. Nucleic Acids Res. 2016 Jun 20;44(11):5010-21. doi: 10.1093/nar/gkw355. Epub 2016 Apr 30. Nucleic Acids Res. 2016. PMID: 27131787 Free PMC article.

3

ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data.

Oki S, Ohta T, Shioi G, Hatanaka H, Ogasawara O, Okuda Y, Kawaji H, Nakaki R, Sese J, Meno C. Oki S, et al. Among authors: ohta t. EMBO Rep. 2018 Dec;19(12):e46255. doi: 10.15252/embr.201846255. Epub 2018 Nov 9. EMBO Rep. 2018. PMID: 30413482 Free PMC article.

4

ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data.

Zou Z, Ohta T, Miura F, Oki S. Zou Z, et al. Among authors: ohta t. Nucleic Acids Res. 2022 Jul 5;50(W1):W175-W182. doi: 10.1093/nar/gkac199. Nucleic Acids Res. 2022. PMID: 35325188 Free PMC article.

5

GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.

Terao C, Momozawa Y, Ishigaki K, Kawakami E, Akiyama M, Loh PR, Genovese G, Sugishita H, Ohta T, Hirata M, Perry JRB, Matsuda K, Murakami Y, Kubo M, Kamatani Y. Terao C, et al. Among authors: ohta t. Nat Commun. 2019 Oct 17;10(1):4719. doi: 10.1038/s41467-019-12705-5. Nat Commun. 2019. PMID: 31624269 Free PMC article.

6

A workflow reproducibility scale for automatic validation of biological interpretation results.

Suetake H, Fukusato T, Igarashi T, Ohta T. Suetake H, et al. Among authors: ohta t. Gigascience. 2022 Dec 28;12:giad031. doi: 10.1093/gigascience/giad031. Epub 2023 May 8. Gigascience. 2022. PMID: 37150537 Free PMC article.

7

Sapporo: A workflow execution service that encourages the reuse of workflows in various languages in bioinformatics.

Suetake H, Tanjo T, Ishii M, P Kinoshita B, Fujino T, Hachiya T, Kodama Y, Fujisawa T, Ogasawara O, Shimizu A, Arita M, Fukusato T, Igarashi T, Ohta T. Suetake H, et al. Among authors: ohta t. F1000Res. 2024 Jun 24;11:889. doi: 10.12688/f1000research.122924.2. eCollection 2022. F1000Res. 2024. PMID: 39070189 Free PMC article.

8

Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows.

Suetake H, Fukusato T, Igarashi T, Ohta T. Suetake H, et al. Among authors: ohta t. Gigascience. 2022 Dec 28;12:giad006. doi: 10.1093/gigascience/giad006. Epub 2023 Feb 22. Gigascience. 2022. PMID: 36810800 Free PMC article.

9

Experimental design-based functional mining and characterization of high-throughput sequencing data in the sequence read archive.

Nakazato T, Ohta T, Bono H. Nakazato T, et al. Among authors: ohta t. PLoS One. 2013 Oct 22;8(10):e77910. doi: 10.1371/journal.pone.0077910. eCollection 2013. PLoS One. 2013. PMID: 24167589 Free PMC article.

10

Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection.

Ohta T, Tanjo T, Ogasawara O. Ohta T, et al. Gigascience. 2019 Apr 1;8(4):giz052. doi: 10.1093/gigascience/giz052. Gigascience. 2019. PMID: 31222199 Free PMC article.

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