Park JY - Search Results

1

Use of acetate as substrate for sustainable production of homoserine and threonine by Escherichia coli W3110: A modular metabolic engineering approach.

Vo TM, Park JY, Kim D, Park S. Vo TM, et al. Among authors: park jy, park s. Metab Eng. 2024 Jul;84:13-22. doi: 10.1016/j.ymben.2024.05.004. Epub 2024 May 23. Metab Eng. 2024. PMID: 38796054

2

Genome-scale evaluation of core one-carbon metabolism in gammaproteobacterial methanotrophs grown on methane and methanol.

Nguyen AD, Park JY, Hwang IY, Hamilton R, Kalyuzhnaya MG, Kim D, Lee EY. Nguyen AD, et al. Among authors: park jy. Metab Eng. 2020 Jan;57:1-12. doi: 10.1016/j.ymben.2019.10.004. Epub 2019 Oct 15. Metab Eng. 2020. PMID: 31626985

3

Comprehensive Genome Analysis on the Novel Species Sphingomonas panacis DCY99^T Reveals Insights into Iron Tolerance of Ginseng.

Kim YJ, Park JY, Balusamy SR, Huo Y, Nong LK, Thi Le H, Yang DC, Kim D. Kim YJ, et al. Among authors: park jy. Int J Mol Sci. 2020 Mar 16;21(6):2019. doi: 10.3390/ijms21062019. Int J Mol Sci. 2020. PMID: 32188055 Free PMC article.

4

Model-driven experimental design workflow expands understanding of regulatory role of Nac in Escherichia coli.

Park JY, Lee SM, Ebrahim A, Scott-Nevros ZK, Kim J, Yang L, Sastry A, Seo SW, Palsson BO, Kim D. Park JY, et al. NAR Genom Bioinform. 2023 Jan 20;5(1):lqad006. doi: 10.1093/nargab/lqad006. eCollection 2023 Mar. NAR Genom Bioinform. 2023. PMID: 36685725 Free PMC article.

5

Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling.

Bang I, Lee SM, Park S, Park JY, Nong LK, Gao Y, Palsson BO, Kim D. Bang I, et al. Among authors: park jy, park s. Brief Bioinform. 2023 Mar 19;24(2):bbad024. doi: 10.1093/bib/bbad024. Brief Bioinform. 2023. PMID: 36702751

6

Blanket antimicrobial resistance gene database with structural information, BOARDS, provides insights on historical landscape of resistance prevalence and effects of mutations in enzyme structure.

Ko S, Kim J, Lim J, Lee S-M, Park JY, Woo J, Scott-Nevros ZK, Kim JR, Yoon H, Kim D. Ko S, et al. Among authors: park jy. mSystems. 2024 Jan 23;9(1):e0094323. doi: 10.1128/msystems.00943-23. Epub 2023 Dec 12. mSystems. 2024. PMID: 38085058 Free PMC article.

7

Experimental promoter identification of a foodborne pathogen Salmonella enterica subsp. enterica serovar Typhimurium with near single base-pair resolution.

Lee SM, Le HT, Taizhanova A, Nong LK, Park JY, Lee EJ, Palsson BO, Kim D. Lee SM, et al. Among authors: park jy. Front Microbiol. 2024 Jan 4;14:1271121. doi: 10.3389/fmicb.2023.1271121. eCollection 2023. Front Microbiol. 2024. PMID: 38239730 Free PMC article.

8

Unveiling the novel regulatory roles of RpoD-family sigma factors in Salmonella Typhimurium heat shock response through systems biology approaches.

Park JY, Jang M, Lee SM, Woo J, Lee EJ, Kim D. Park JY, et al. PLoS Genet. 2024 Oct 29;20(10):e1011464. doi: 10.1371/journal.pgen.1011464. eCollection 2024 Oct. PLoS Genet. 2024. PMID: 39471211 Free PMC article.

9

An Optimized Method for Reconstruction of Transcriptional Regulatory Networks in Bacteria Using ChIP-exo and RNA-seq Datasets.

Jang M, Park JY, Lee G, Kim D. Jang M, et al. Among authors: park jy. J Microbiol. 2024 Dec;62(12):1075-1088. doi: 10.1007/s12275-024-00181-6. Epub 2024 Nov 11. J Microbiol. 2024. PMID: 39527186

10

Deep learning for NAD/NADP cofactor prediction and engineering using transformer attention analysis in enzymes.

Kim J, Woo J, Park JY, Kim KJ, Kim D. Kim J, et al. Among authors: park jy. Metab Eng. 2025 Jan;87:86-94. doi: 10.1016/j.ymben.2024.11.007. Epub 2024 Nov 20. Metab Eng. 2025. PMID: 39571721

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