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The mutagenic forces shaping the genomic landscape of lung cancer in never smokers.
Díaz-Gay M, Zhang T, Hoang PH, Khandekar A, Zhao W, Steele CD, Otlu B, Nandi SP, Vangara R, Bergstrom EN, Kazachkova M, Pich O, Swanton C, Hsiung CA, Chang IS, Wong MP, Leung KC, Sang J, McElderry J, Yang L, Nowak MA, Shi J, Rothman N, Wedge DC, Homer R, Yang SR, Lan Q, Zhu B, Chanock SJ, Alexandrov LB, Landi MT. Díaz-Gay M, et al. Among authors: zhang t. medRxiv [Preprint]. 2024 May 17:2024.05.15.24307318. doi: 10.1101/2024.05.15.24307318. medRxiv. 2024. PMID: 38798417 Free PMC article. Preprint.
APOBEC shapes tumor evolution and age at onset of lung cancer in smokers.
Zhang T, Sang J, Hoang PH, Zhao W, Rosenbaum J, Johnson KE, Klimczak LJ, McElderry J, Klein A, Wirth C, Bergstrom EN, Díaz-Gay M, Vangara R, Colon-Matos F, Hutchinson A, Lawrence SM, Cole N, Zhu B, Przytycka TM, Shi J, Caporaso NE, Homer R, Pesatori AC, Consonni D, Imielinski M, Chanock SJ, Wedge DC, Gordenin DA, Alexandrov LB, Harris RS, Landi MT. Zhang T, et al. bioRxiv [Preprint]. 2024 Apr 3:2024.04.02.587805. doi: 10.1101/2024.04.02.587805. bioRxiv. 2024. PMID: 38617360 Free PMC article. Preprint.
mSigSDK - private, at scale, computation of mutation signatures.
Ge A, Zhang T, Martins YC, Landi MT, Park B, Chen K, Balasubramanian J, Almeida JS. Ge A, et al. Among authors: zhang t. ArXiv [Preprint]. 2024 Jan 19:arXiv:2308.02995v2. ArXiv. 2024. PMID: 38327678 Free PMC article. Preprint.
Large-scale multi-omic analysis identifies noncoding somatic driver mutations and nominates ZFP36L2 as a driver gene for pancreatic ductal adenocarcinoma.
Zhong J, O'Brien A, Patel M, Eiser D, Mobaraki M, Collins I, Wang L, Guo K, TruongVo T, Jermusyk A, O'Neill M, Dill CD, Wells AD, Leonard ME, Pippin JA, Grant SFA, Zhang T, Andresson T, Connelly KE, Shi J, Arda HE, Hoskins JW, Amundadottir LT. Zhong J, et al. Among authors: zhang t. medRxiv [Preprint]. 2024 Sep 24:2024.09.22.24314165. doi: 10.1101/2024.09.22.24314165. medRxiv. 2024. PMID: 39371173 Free PMC article. Preprint.
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