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29 results

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Generative adversarial networks accurately reconstruct pan-cancer histology from pathologic, genomic, and radiographic latent features.
Howard FM, Hieromnimon HM, Ramesh S, Dolezal J, Kochanny S, Zhang Q, Feiger B, Peterson J, Fan C, Perou CM, Vickery J, Sullivan M, Cole K, Khramtsova G, Pearson AT. Howard FM, et al. Among authors: kochanny s. Sci Adv. 2024 Nov 15;10(46):eadq0856. doi: 10.1126/sciadv.adq0856. Epub 2024 Nov 15. Sci Adv. 2024. PMID: 39546597 Free PMC article.
Artificial intelligence-based morphologic classification and molecular characterization of neuroblastic tumors from digital histopathology.
Ramesh S, Dyer E, Pomaville M, Doytcheva K, Dolezal J, Kochanny S, Terhaar R, Mehrhoff CJ, Patel K, Brewer J, Kusswurm B, Naranjo A, Shimada H, Cipriani NA, Husain AN, Pytel P, Sokol EA, Cohn SL, George RE, Pearson AT, Applebaum MA. Ramesh S, et al. Among authors: kochanny s. NPJ Precis Oncol. 2024 Nov 8;8(1):255. doi: 10.1038/s41698-024-00745-0. NPJ Precis Oncol. 2024. PMID: 39511421 Free PMC article.
Developing a low-cost, open-source, locally manufactured workstation and computational pipeline for automated histopathology evaluation using deep learning.
Choudhury D, Dolezal JM, Dyer E, Kochanny S, Ramesh S, Howard FM, Margalus JR, Schroeder A, Schulte J, Garassino MC, Kather JN, Pearson AT. Choudhury D, et al. Among authors: kochanny s. EBioMedicine. 2024 Sep;107:105276. doi: 10.1016/j.ebiom.2024.105276. Epub 2024 Aug 27. EBioMedicine. 2024. PMID: 39197222 Free PMC article.
Artificial intelligence-based morphologic classification and molecular characterization of neuroblastic tumors from digital histopathology.
Applebaum M, Ramesh S, Dyer E, Pomaville M, Doytcheva K, Dolezal J, Kochanny S, Terhaar R, Mehrhoff C, Patel K, Brewer J, Kusswurm B, Naranjo A, Shimada H, Sokol E, Cohn S, George R, Pearson A. Applebaum M, et al. Among authors: kochanny s. Res Sq [Preprint]. 2024 Jun 4:rs.3.rs-4396782. doi: 10.21203/rs.3.rs-4396782/v1. Res Sq. 2024. Update in: NPJ Precis Oncol. 2024 Nov 8;8(1):255. doi: 10.1038/s41698-024-00745-0 PMID: 38883758 Free PMC article. Updated. Preprint.
Artificial intelligence-based epigenomic, transcriptomic and histologic signatures of tobacco use in oral squamous cell carcinoma.
Viet CT, Asam KR, Yu G, Dyer EC, Kochanny S, Thomas CM, Callahan NF, Morlandt AB, Cheng AC, Patel AA, Roden DF, Young S, Melville J, Shum J, Walker PC, Nguyen KK, Kidd SN, Lee SC, Folk GS, Viet DT, Grandhi A, Deisch J, Ye Y, Momen-Heravi F, Pearson AT, Aouizerat BE. Viet CT, et al. Among authors: kochanny s. NPJ Precis Oncol. 2024 Jun 8;8(1):130. doi: 10.1038/s41698-024-00605-x. NPJ Precis Oncol. 2024. PMID: 38851780 Free PMC article.
Acquired resistance to immunotherapy and chemoradiation in MYC amplified head and neck cancer.
Cyberski TF, Singh A, Korzinkin M, Mishra V, Pun F, Shen L, Wing C, Cheng X, Baird B, Miao Y, Elkabets M, Kochanny S, Guo W, Dyer E, Pearson AT, Juloori A, Lingen M, Cole G, Zhavoronkov A, Agrawal N, Izumchenko E, Rosenberg AJ. Cyberski TF, et al. Among authors: kochanny s. NPJ Precis Oncol. 2024 May 23;8(1):114. doi: 10.1038/s41698-024-00606-w. NPJ Precis Oncol. 2024. PMID: 38783041 Free PMC article.
Generative Adversarial Networks Accurately Reconstruct Pan-Cancer Histology from Pathologic, Genomic, and Radiographic Latent Features.
Howard FM, Hieromnimon HM, Ramesh S, Dolezal J, Kochanny S, Zhang Q, Feiger B, Peterson J, Fan C, Perou CM, Vickery J, Sullivan M, Cole K, Khramtsova G, Pearson AT. Howard FM, et al. Among authors: kochanny s. bioRxiv [Preprint]. 2024 Mar 25:2024.03.22.586306. doi: 10.1101/2024.03.22.586306. bioRxiv. 2024. Update in: Sci Adv. 2024 Nov 15;10(46):eadq0856. doi: 10.1126/sciadv.adq0856 PMID: 38585926 Free PMC article. Updated. Preprint.
Deep learning generates synthetic cancer histology for explainability and education.
Dolezal JM, Wolk R, Hieromnimon HM, Howard FM, Srisuwananukorn A, Karpeyev D, Ramesh S, Kochanny S, Kwon JW, Agni M, Simon RC, Desai C, Kherallah R, Nguyen TD, Schulte JJ, Cole K, Khramtsova G, Garassino MC, Husain AN, Li H, Grossman R, Cipriani NA, Pearson AT. Dolezal JM, et al. Among authors: kochanny s. NPJ Precis Oncol. 2023 May 29;7(1):49. doi: 10.1038/s41698-023-00399-4. NPJ Precis Oncol. 2023. PMID: 37248379 Free PMC article.
29 results