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The Immunopeptidomics Ontology (ImPO).
Faria D, Eugénio P, Contreiras Silva M, Balbi L, Bedran G, Kallor AA, Nunes S, Palkowski A, Waleron M, Alfaro JA, Pesquita C. Faria D, et al. Database (Oxford). 2024 Jun 7;2024:baae014. doi: 10.1093/database/baae014. Database (Oxford). 2024. PMID: 38857186 Free PMC article.
Ontologies and Knowledge Graphs in Oncology Research.
Silva MC, Eugénio P, Faria D, Pesquita C. Silva MC, et al. Among authors: faria d. Cancers (Basel). 2022 Apr 10;14(8):1906. doi: 10.3390/cancers14081906. Cancers (Basel). 2022. PMID: 35454813 Free PMC article. Review.
Application of gene ontology to gene identification.
Bastos HP, Tavares B, Pesquita C, Faria D, Couto FM. Bastos HP, et al. Among authors: faria d. Methods Mol Biol. 2011;760:141-57. doi: 10.1007/978-1-61779-176-5_9. Methods Mol Biol. 2011. PMID: 21779995
Tackling the challenges of matching biomedical ontologies.
Faria D, Pesquita C, Mott I, Martins C, Couto FM, Cruz IF. Faria D, et al. J Biomed Semantics. 2018 Jan 15;9(1):4. doi: 10.1186/s13326-017-0170-9. J Biomed Semantics. 2018. PMID: 29335022 Free PMC article.
Semantic similarity in biomedical ontologies.
Pesquita C, Faria D, Falcão AO, Lord P, Couto FM. Pesquita C, et al. Among authors: faria d. PLoS Comput Biol. 2009 Jul;5(7):e1000443. doi: 10.1371/journal.pcbi.1000443. Epub 2009 Jul 31. PLoS Comput Biol. 2009. PMID: 19649320 Free PMC article. Review.
Mining GO annotations for improving annotation consistency.
Faria D, Schlicker A, Pesquita C, Bastos H, Ferreira AE, Albrecht M, Falcão AO. Faria D, et al. PLoS One. 2012;7(7):e40519. doi: 10.1371/journal.pone.0040519. Epub 2012 Jul 25. PLoS One. 2012. PMID: 22848383 Free PMC article.
CorkOakDB-The Cork Oak Genome Database Portal.
Arias-Baldrich C, Silva MC, Bergeretti F, Chaves I, Miguel C, Saibo NJM, Sobral D, Faria D, Barros PM. Arias-Baldrich C, et al. Among authors: faria d. Database (Oxford). 2020 Dec 31;2020:baaa114. doi: 10.1093/database/baaa114. Database (Oxford). 2020. PMID: 33382885 Free PMC article.
351 results