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Page 1
The tidyomics ecosystem: enhancing omic data analyses.
Hutchison WJ, Keyes TJ; tidyomics Consortium; Crowell HL, Serizay J, Soneson C, Davis ES, Sato N, Moses L, Tarlinton B, Nahid AA, Kosmac M, Clayssen Q, Yuan V, Mu W, Park JE, Mamede I, Ryu MH, Axisa PP, Paiz P, Poon CL, Tang M, Gottardo R, Morgan M, Lee S, Lawrence M, Hicks SC, Nolan GP, Davis KL, Papenfuss AT, Love MI, Mangiola S. Hutchison WJ, et al. Among authors: morgan m. Nat Methods. 2024 Jul;21(7):1166-1170. doi: 10.1038/s41592-024-02299-2. Epub 2024 Jun 14. Nat Methods. 2024. PMID: 38877315
Orchestrating high-throughput genomic analysis with Bioconductor.
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: morgan m. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.
Scalable Genomics with R and Bioconductor.
Lawrence M, Morgan M. Lawrence M, et al. Among authors: morgan m. Stat Sci. 2014 May;29(2):214-226. doi: 10.1214/14-STS476. Epub 2014 Aug 18. Stat Sci. 2014. PMID: 28018047 Free PMC article.
Orchestrating single-cell analysis with Bioconductor.
Amezquita RA, Lun ATL, Becht E, Carey VJ, Carpp LN, Geistlinger L, Marini F, Rue-Albrecht K, Risso D, Soneson C, Waldron L, Pagès H, Smith ML, Huber W, Morgan M, Gottardo R, Hicks SC. Amezquita RA, et al. Among authors: morgan m. Nat Methods. 2020 Feb;17(2):137-145. doi: 10.1038/s41592-019-0654-x. Epub 2019 Dec 2. Nat Methods. 2020. PMID: 31792435 Free PMC article. Review.
Publisher Correction: Orchestrating single-cell analysis with Bioconductor.
Amezquita RA, Lun ATL, Becht E, Carey VJ, Carpp LN, Geistlinger L, Marini F, Rue-Albrecht K, Risso D, Soneson C, Waldron L, Pagès H, Smith ML, Huber W, Morgan M, Gottardo R, Hicks SC. Amezquita RA, et al. Among authors: morgan m. Nat Methods. 2020 Feb;17(2):242. doi: 10.1038/s41592-019-0700-8. Nat Methods. 2020. PMID: 31827272
Tximeta: Reference sequence checksums for provenance identification in RNA-seq.
Love MI, Soneson C, Hickey PF, Johnson LK, Pierce NT, Shepherd L, Morgan M, Patro R. Love MI, et al. Among authors: morgan m. PLoS Comput Biol. 2020 Feb 25;16(2):e1007664. doi: 10.1371/journal.pcbi.1007664. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32097405 Free PMC article.
A multi-organ map of the human immune system across age, sex and ethnicity.
Mangiola S, Milton M, Ranathunga N, Li-Wai-Suen C, Odainic A, Yang E, Hutchison W, Garnham A, Iskander J, Pal B, Yadav V, Rossello J, Carey VJ, Morgan M, Bedoui S, Kallies A, Papenfuss AT. Mangiola S, et al. Among authors: morgan m. bioRxiv [Preprint]. 2024 Apr 29:2023.06.08.542671. doi: 10.1101/2023.06.08.542671. bioRxiv. 2024. PMID: 38746418 Free PMC article. Preprint.
The tidyomics ecosystem: Enhancing omic data analyses.
Hutchison WJ, Keyes TJ; tidyomics Consortium; Crowell HL, Serizay J, Soneson C, Davis ES, Sato N, Moses L, Tarlinton B, Nahid AA, Kosmac M, Clayssen Q, Yuan V, Mu W, Park JE, Mamede I, Ryu MH, Axisa PP, Paiz P, Poon CL, Tang M, Gottardo R, Morgan M, Lee S, Lawrence M, Hicks SC, Nolan GP, Davis KL, Papenfuss AT, Love MI, Mangiola S. Hutchison WJ, et al. Among authors: morgan m. bioRxiv [Preprint]. 2024 May 22:2023.09.10.557072. doi: 10.1101/2023.09.10.557072. bioRxiv. 2024. Update in: Nat Methods. 2024 Jul;21(7):1166-1170. doi: 10.1038/s41592-024-02299-2 PMID: 38826347 Free PMC article. Updated. Preprint.
HuBMAPR: an R Client for the HuBMAP Data Portal.
Hou C, Ghazanfar S, Marini F, Morgan M, Hicks SC. Hou C, et al. Among authors: morgan m. bioRxiv [Preprint]. 2024 Sep 27:2024.09.26.615227. doi: 10.1101/2024.09.26.615227. bioRxiv. 2024. PMID: 39386647 Free PMC article. Preprint.
5,136 results