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Page 1
PhyKIT: A Multitool for Phylogenomics.
Steenwyk JL, Martínez-Redondo GI, Buida TJ 3rd, Gluck-Thaler E, Shen XX, Gabaldón T, Rokas A, Fernández R. Steenwyk JL, et al. Curr Protoc. 2024 Nov;4(11):e70016. doi: 10.1002/cpz1.70016. Curr Protoc. 2024. PMID: 39475193
Evolutionary origin and population diversity of a cryptic hybrid pathogen.
Steenwyk JL, Knowles S, Bastos RW, Balamurugan C, Rinker D, Mead ME, Roberts CD, Raja HA, Li Y, Colabardini AC, de Castro PA, Dos Reis TF, Gumilang A, Almagro-Molto M, Alanio A, Garcia-Hermoso D, Delbaje E, Pontes L, Pinzan CF, Schreiber AZ, Canóvas D, Sanchez Luperini R, Lagrou K, Torrado E, Rodrigues F, Oberlies NH, Zhou X, Goldman GH, Rokas A. Steenwyk JL, et al. Nat Commun. 2024 Sep 28;15(1):8412. doi: 10.1038/s41467-024-52639-1. Nat Commun. 2024. PMID: 39333551 Free PMC article.
Diverse signatures of convergent evolution in cactus-associated yeasts.
Gonçalves C, Harrison MC, Steenwyk JL, Opulente DA, LaBella AL, Wolters JF, Zhou X, Shen XX, Groenewald M, Hittinger CT, Rokas A. Gonçalves C, et al. Among authors: steenwyk jl. PLoS Biol. 2024 Sep 23;22(9):e3002832. doi: 10.1371/journal.pbio.3002832. eCollection 2024 Sep. PLoS Biol. 2024. PMID: 39312572 Free PMC article.
A taxon-rich and genome-scale phylogeny of Opisthokonta.
Liu H, Steenwyk JL, Zhou X, Schultz DT, Kocot KM, Shen XX, Rokas A, Li Y. Liu H, et al. Among authors: steenwyk jl. PLoS Biol. 2024 Sep 16;22(9):e3002794. doi: 10.1371/journal.pbio.3002794. eCollection 2024 Sep. PLoS Biol. 2024. PMID: 39283949 Free PMC article.
Reticulate evolution: Detection and utility in the phylogenomics era.
Bjornson S, Verbruggen H, Upham NS, Steenwyk JL. Bjornson S, et al. Among authors: steenwyk jl. Mol Phylogenet Evol. 2024 Dec;201:108197. doi: 10.1016/j.ympev.2024.108197. Epub 2024 Sep 11. Mol Phylogenet Evol. 2024. PMID: 39270765 Free article. Review.
Aspergillus fumigatus conidial surface-associated proteome reveals factors for fungal evasion and host immunity modulation.
Pinzan CF, Valero C, de Castro PA, da Silva JL, Earle K, Liu H, Horta MAC, Kniemeyer O, Krüger T, Pschibul A, Cömert DN, Heinekamp T, Brakhage AA, Steenwyk JL, Mead ME, Hermsdorf N, Filler SG, da Rosa-Garzon NG, Delbaje E, Bromley MJ, Cabral H, Diehl C, Angeli CB, Palmisano G, Ibrahim AS, Rinker DC, Sauters TJC, Steffen K, Gumilang A, Rokas A, Gago S, Dos Reis TF, Goldman GH. Pinzan CF, et al. Among authors: steenwyk jl. Nat Microbiol. 2024 Oct;9(10):2710-2726. doi: 10.1038/s41564-024-01782-y. Epub 2024 Aug 27. Nat Microbiol. 2024. PMID: 39191887
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage.
Feng B, Li Y, Liu H, Steenwyk JL, David KT, Tian X, Xu B, Gonçalves C, Opulente DA, LaBella AL, Harrison MC, Wolters JF, Shao S, Chen Z, Fisher KJ, Groenewald M, Hittinger CT, Shen XX, Rokas A, Zhou X, Li Y. Feng B, et al. Among authors: steenwyk jl. bioRxiv [Preprint]. 2024 Jun 6:2024.06.05.597512. doi: 10.1101/2024.06.05.597512. bioRxiv. 2024. PMID: 38895429 Free PMC article. Preprint.
The promise and pitfalls of synteny in phylogenomics.
Steenwyk JL, King N. Steenwyk JL, et al. PLoS Biol. 2024 May 20;22(5):e3002632. doi: 10.1371/journal.pbio.3002632. eCollection 2024 May. PLoS Biol. 2024. PMID: 38768403 Free PMC article.
83 results