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Page 1
Single-cell integration reveals metaplasia in inflammatory gut diseases.
Oliver AJ, Huang N, Bartolome-Casado R, Li R, Koplev S, Nilsen HR, Moy M, Cakir B, Polanski K, Gudiño V, Melón-Ardanaz E, Sumanaweera D, Dimitrov D, Milchsack LM, FitzPatrick MEB, Provine NM, Boccacino JM, Dann E, Predeus AV, To K, Prete M, Chapman JA, Masi AC, Stephenson E, Engelbert J, Lobentanzer S, Perera S, Richardson L, Kapuge R, Wilbrey-Clark A, Semprich CI, Ellams S, Tudor C, Joseph P, Garrido-Trigo A, Corraliza AM, Oliver TRW, Hook CE, James KR, Mahbubani KT, Saeb-Parsy K, Zilbauer M, Saez-Rodriguez J, Høivik ML, Bækkevold ES, Stewart CJ, Berrington JE, Meyer KB, Klenerman P, Salas A, Haniffa M, Jahnsen FL, Elmentaite R, Teichmann SA. Oliver AJ, et al. Among authors: mahbubani kt. Nature. 2024 Nov;635(8039):699-707. doi: 10.1038/s41586-024-07571-1. Epub 2024 Nov 20. Nature. 2024. PMID: 39567783 Free PMC article.
Probe set selection for targeted spatial transcriptomics.
Kuemmerle LB, Luecken MD, Firsova AB, Barros de Andrade E Sousa L, Straßer L, Mekki II, Campi F, Heumos L, Shulman M, Beliaeva V, Hediyeh-Zadeh S, Schaar AC, Mahbubani KT, Sountoulidis A, Balassa T, Kovacs F, Horvath P, Piraud M, Ertürk A, Samakovlis C, Theis FJ. Kuemmerle LB, et al. Among authors: mahbubani kt. Nat Methods. 2024 Dec;21(12):2260-2270. doi: 10.1038/s41592-024-02496-z. Epub 2024 Nov 18. Nat Methods. 2024. PMID: 39558096 Free PMC article.
Network-based prioritization and validation of regulators of vascular smooth muscle cell proliferation in disease.
Lambert J, Oc S, Worssam MD, Häußler D, Solomon CU, Figg NL, Baxter R, Imaz M, Taylor JCK, Foote K, Finigan A, Mahbubani KT, Webb TR, Ye S, Bennett MR, Krüger A, Spivakov M, Jørgensen HF. Lambert J, et al. Among authors: mahbubani kt. Nat Cardiovasc Res. 2024 Jun;3(6):714-733. doi: 10.1038/s44161-024-00474-4. Epub 2024 Jun 6. Nat Cardiovasc Res. 2024. PMID: 39215134
An integrated single-cell reference atlas of the human endometrium.
Marečková M, Garcia-Alonso L, Moullet M, Lorenzi V, Petryszak R, Sancho-Serra C, Oszlanczi A, Icoresi Mazzeo C, Wong FCK, Kelava I, Hoffman S, Krassowski M, Garbutt K, Gaitskell K, Yancheva S, Woon EV, Male V, Granne I, Hellner K, Mahbubani KT, Saeb-Parsy K, Lotfollahi M, Prigmore E, Southcombe J, Dragovic RA, Becker CM, Zondervan KT, Vento-Tormo R. Marečková M, et al. Among authors: mahbubani kt. Nat Genet. 2024 Sep;56(9):1925-1937. doi: 10.1038/s41588-024-01873-w. Epub 2024 Aug 28. Nat Genet. 2024. PMID: 39198675 Free PMC article.
FlowAtlas: an interactive tool for high-dimensional immunophenotyping analysis bridging FlowJo with computational tools in Julia.
Coppard V, Szep G, Georgieva Z, Howlett SK, Jarvis LB, Rainbow DB, Suchanek O, Needham EJ, Mousa HS, Menon DK, Feyertag F, Mahbubani KT, Saeb-Parsy K, Jones JL. Coppard V, et al. Among authors: mahbubani kt. Front Immunol. 2024 Jul 17;15:1425488. doi: 10.3389/fimmu.2024.1425488. eCollection 2024. Front Immunol. 2024. PMID: 39086484 Free PMC article.
Network-based prioritization and validation of regulators of vascular smooth muscle cell proliferation in disease.
Lambert J, Oc S, Worssam MD, Häußler D, Solomon CU, Figg NL, Baxter R, Imaz M, Taylor JCK, Foote K, Finigan A, Mahbubani KT, Webb TR, Ye S, Bennett MR, Krüger A, Spivakov M, Jørgensen HF. Lambert J, et al. Among authors: mahbubani kt. Nat Cardiovasc Res. 2024;3(6):714-733. doi: 10.1038/s44161-024-00474-4. Epub 2024 Jun 6. Nat Cardiovasc Res. 2024. PMID: 38898928 Free PMC article.
Human skeletal muscle aging atlas.
Kedlian VR, Wang Y, Liu T, Chen X, Bolt L, Tudor C, Shen Z, Fasouli ES, Prigmore E, Kleshchevnikov V, Pett JP, Li T, Lawrence JEG, Perera S, Prete M, Huang N, Guo Q, Zeng X, Yang L, Polański K, Chipampe NJ, Dabrowska M, Li X, Bayraktar OA, Patel M, Kumasaka N, Mahbubani KT, Xiang AP, Meyer KB, Saeb-Parsy K, Teichmann SA, Zhang H. Kedlian VR, et al. Among authors: mahbubani kt. Nat Aging. 2024 May;4(5):727-744. doi: 10.1038/s43587-024-00613-3. Epub 2024 Apr 15. Nat Aging. 2024. PMID: 38622407 Free PMC article.
Multi-omics and imaging mass cytometry characterization of human kidneys to identify pathways and phenotypes associated with impaired kidney function.
Asowata EO, Romoli S, Sargeant R, Tan JY, Hoffmann S, Huang MM, Mahbubani KT, Krause FN, Jachimowicz D, Agren R, Koulman A, Jenkins B, Musial B, Griffin JL, Soderberg M, Ling S, Hansen PBL, Saeb-Parsy K, Woollard KJ. Asowata EO, et al. Among authors: mahbubani kt. Kidney Int. 2024 Jul;106(1):85-97. doi: 10.1016/j.kint.2024.01.041. Epub 2024 Feb 29. Kidney Int. 2024. PMID: 38431215 Free article.
Chromatin accessibility profiling of targeted cell populations with laser capture microdissection coupled to ATAC-seq.
Carraro C, Bonaguro L, Srinivasa R, van Uelft M, Isakzai V, Schulte-Schrepping J, Gambhir P, Elmzzahi T, Montgomery JV, Hayer H, Li Y, Theis H, Kraut M, Mahbubani KT, Aschenbrenner AC, König I, Fava E, Fried HU, De Domenico E, Beyer M, Saglam A, Schultze JL. Carraro C, et al. Among authors: mahbubani kt. Cell Rep Methods. 2023 Oct 23;3(10):100598. doi: 10.1016/j.crmeth.2023.100598. Epub 2023 Sep 29. Cell Rep Methods. 2023. PMID: 37776856 Free PMC article.
Spatially resolved multiomics of human cardiac niches.
Kanemaru K, Cranley J, Muraro D, Miranda AMA, Ho SY, Wilbrey-Clark A, Patrick Pett J, Polanski K, Richardson L, Litvinukova M, Kumasaka N, Qin Y, Jablonska Z, Semprich CI, Mach L, Dabrowska M, Richoz N, Bolt L, Mamanova L, Kapuge R, Barnett SN, Perera S, Talavera-López C, Mulas I, Mahbubani KT, Tuck L, Wang L, Huang MM, Prete M, Pritchard S, Dark J, Saeb-Parsy K, Patel M, Clatworthy MR, Hübner N, Chowdhury RA, Noseda M, Teichmann SA. Kanemaru K, et al. Among authors: mahbubani kt. Nature. 2023 Jul;619(7971):801-810. doi: 10.1038/s41586-023-06311-1. Epub 2023 Jul 12. Nature. 2023. PMID: 37438528 Free PMC article.
39 results