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GENTANGLE: integrated computational design of gene entanglements.
Martí JM, Hsu C, Rochereau C, Xu C, Blazejewski T, Nisonoff H, Leonard SP, Kang-Yun CS, Chlebek J, Ricci DP, Park D, Wang H, Listgarten J, Jiao Y, Allen JE. Martí JM, et al. Among authors: allen je. Bioinformatics. 2024 Jul 1;40(7):btae380. doi: 10.1093/bioinformatics/btae380. Bioinformatics. 2024. PMID: 38905502 Free PMC article.
Predicting tumor cell line response to drug pairs with deep learning.
Xia F, Shukla M, Brettin T, Garcia-Cardona C, Cohn J, Allen JE, Maslov S, Holbeck SL, Doroshow JH, Evrard YA, Stahlberg EA, Stevens RL. Xia F, et al. Among authors: allen je. BMC Bioinformatics. 2018 Dec 21;19(Suppl 18):486. doi: 10.1186/s12859-018-2509-3. BMC Bioinformatics. 2018. PMID: 30577754 Free PMC article.
AMPL: A Data-Driven Modeling Pipeline for Drug Discovery.
Minnich AJ, McLoughlin K, Tse M, Deng J, Weber A, Murad N, Madej BD, Ramsundar B, Rush T, Calad-Thomson S, Brase J, Allen JE. Minnich AJ, et al. Among authors: allen je. J Chem Inf Model. 2020 Apr 27;60(4):1955-1968. doi: 10.1021/acs.jcim.9b01053. Epub 2020 Apr 16. J Chem Inf Model. 2020. PMID: 32243153 Free PMC article.
Discovery of Small-Molecule Inhibitors of SARS-CoV-2 Proteins Using a Computational and Experimental Pipeline.
Lau EY, Negrete OA, Bennett WFD, Bennion BJ, Borucki M, Bourguet F, Epstein A, Franco M, Harmon B, He S, Jones D, Kim H, Kirshner D, Lao V, Lo J, McLoughlin K, Mosesso R, Murugesh DK, Saada EA, Segelke B, Stefan MA, Stevenson GA, Torres MW, Weilhammer DR, Wong S, Yang Y, Zemla A, Zhang X, Zhu F, Allen JE, Lightstone FC. Lau EY, et al. Among authors: allen je. Front Mol Biosci. 2021 Jul 9;8:678701. doi: 10.3389/fmolb.2021.678701. eCollection 2021. Front Mol Biosci. 2021. PMID: 34327214 Free PMC article.
578 results