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Page 1
Long-read structural and epigenetic profiling of a kidney tumor-matched sample with nanopore sequencing and optical genome mapping.
Margalit S, Tulpová Z, Detinis Zur T, Michaeli Y, Deek J, Nifker G, Haldar R, Gnatek Y, Omer D, Dekel B, Baris Feldman H, Grunwald A, Ebenstein Y. Margalit S, et al. Among authors: nifker g. NAR Genom Bioinform. 2025 Jan 7;7(1):lqae190. doi: 10.1093/nargab/lqae190. eCollection 2025 Mar. NAR Genom Bioinform. 2025. PMID: 39781516 Free PMC article.
Long-Read Structural and Epigenetic Profiling of a Kidney Tumor-Matched Sample with Nanopore Sequencing and Optical Genome Mapping.
Margalit S, Tulpová Z, Detinis Zur T, Michaeli Y, Deek J, Nifker G, Haldar R, Gnatek Y, Omer D, Dekel B, Feldman HB, Grunwald A, Ebenstein Y. Margalit S, et al. Among authors: nifker g. bioRxiv [Preprint]. 2024 Jun 13:2024.03.31.587463. doi: 10.1101/2024.03.31.587463. bioRxiv. 2024. Update in: NAR Genom Bioinform. 2025 Jan 07;7(1):lqae190. doi: 10.1093/nargab/lqae190 PMID: 38915648 Free PMC article. Updated. Preprint.
Chemo-Enzymatic Fluorescence Labeling Of Genomic DNA For Simultaneous Detection Of Global 5-Methylcytosine And 5-Hydroxymethylcytosine.
Avraham S, Schütz L, Käver L, Dankers A, Margalit S, Michaeli Y, Zirkin S, Torchinsky D, Gilat N, Bahr O, Nifker G, Koren-Michowitz M, Weinhold E, Ebenstein Y. Avraham S, et al. Among authors: nifker g. Chembiochem. 2023 Oct 17;24(20):e202300400. doi: 10.1002/cbic.202300400. Epub 2023 Sep 4. Chembiochem. 2023. PMID: 37518671
Long-read single-molecule maps of the functional methylome.
Sharim H, Grunwald A, Gabrieli T, Michaeli Y, Margalit S, Torchinsky D, Arielly R, Nifker G, Juhasz M, Gularek F, Almalvez M, Dufault B, Chandra SS, Liu A, Bhattacharya S, Chen YW, Vilain E, Wagner KR, Pevsner J, Reifenberger J, Lam ET, Hastie AR, Cao H, Barseghyan H, Weinhold E, Ebenstein Y. Sharim H, et al. Among authors: nifker g. Genome Res. 2019 Apr;29(4):646-656. doi: 10.1101/gr.240739.118. Epub 2019 Mar 7. Genome Res. 2019. PMID: 30846530 Free PMC article.
Epigenetic Optical Mapping of 5-Hydroxymethylcytosine in Nanochannel Arrays.
Gabrieli T, Sharim H, Nifker G, Jeffet J, Shahal T, Arielly R, Levi-Sakin M, Hoch L, Arbib N, Michaeli Y, Ebenstein Y. Gabrieli T, et al. Among authors: nifker g. ACS Nano. 2018 Jul 24;12(7):7148-7158. doi: 10.1021/acsnano.8b03023. Epub 2018 Jun 25. ACS Nano. 2018. PMID: 29924591 Free PMC article.