Chitra U - Search Results

1

A count-based model for delineating cell-cell interactions in spatial transcriptomics data.

Sarkar H, Chitra U, Gold J, Raphael BJ. Sarkar H, et al. Among authors: chitra u. Bioinformatics. 2024 Jun 28;40(Suppl 1):i481-i489. doi: 10.1093/bioinformatics/btae219. Bioinformatics. 2024. PMID: 38940134 Free PMC article.

2

NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks.

Reyna MA, Chitra U, Elyanow R, Raphael BJ. Reyna MA, et al. Among authors: chitra u. J Comput Biol. 2021 May;28(5):469-484. doi: 10.1089/cmb.2020.0435. Epub 2021 Jan 5. J Comput Biol. 2021. PMID: 33400606 Free PMC article.

3

Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics.

Ma C, Chitra U, Zhang S, Raphael BJ. Ma C, et al. Among authors: chitra u. Cell Syst. 2022 Oct 19;13(10):786-797.e13. doi: 10.1016/j.cels.2022.09.002. Cell Syst. 2022. PMID: 36265465 Free PMC article.

4

NetMix2: A Principled Network Propagation Algorithm for Identifying Altered Subnetworks.

Chitra U, Park TY, Raphael BJ. Chitra U, et al. J Comput Biol. 2022 Dec;29(12):1305-1323. doi: 10.1089/cmb.2022.0336. J Comput Biol. 2022. PMID: 36525308 Free PMC article.

5

Mapping the topography of spatial gene expression with interpretable deep learning.

Chitra U, Arnold BJ, Sarkar H, Ma C, Lopez-Darwin S, Sanno K, Raphael BJ. Chitra U, et al. bioRxiv [Preprint]. 2023 Oct 13:2023.10.10.561757. doi: 10.1101/2023.10.10.561757. bioRxiv. 2023. PMID: 37873258 Free PMC article. Preprint.

6

A latent variable model for evaluating mutual exclusivity and co-occurrence between driver mutations in cancer.

Shuaibi A, Chitra U, Raphael BJ. Shuaibi A, et al. Among authors: chitra u. bioRxiv [Preprint]. 2024 Apr 27:2024.04.24.590995. doi: 10.1101/2024.04.24.590995. bioRxiv. 2024. PMID: 38712136 Free PMC article. Preprint.

7

Quantifying higher-order epistasis: beware the chimera.

Chitra U, Arnold BJ, Raphael BJ. Chitra U, et al. bioRxiv [Preprint]. 2024 Jul 19:2024.07.17.603976. doi: 10.1101/2024.07.17.603976. bioRxiv. 2024. PMID: 39071303 Free PMC article. Preprint.

8

Eggs and Poultry Purchase, Storage, and Preparation Practices of Consumers in Selected Asian Countries.

Koppel K, Suwonsichon S, Chitra U, Lee J, Chambers Iv E. Koppel K, et al. Among authors: chitra u. Foods. 2014 Jan 16;3(1):110-127. doi: 10.3390/foods3010110. Foods. 2014. PMID: 28234307 Free PMC article.

9

Role of lifestyle variables on the lipid profile of selected South Indian subjects.

Chitra U, Reddy NK, Balakrishna N. Chitra U, et al. Indian Heart J. 2012 Jan-Feb;64(1):28-34. doi: 10.1016/S0019-4832(12)60007-8. Epub 2012 Mar 26. Indian Heart J. 2012. PMID: 22572422 Free PMC article.

10

The role of breakfast in nutrient intake of urban schoolchildren.

Chitra U, Reddy CR. Chitra U, et al. Public Health Nutr. 2007 Jan;10(1):55-8. doi: 10.1017/S1368980007219640. Public Health Nutr. 2007. PMID: 17212843

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