Yamagami R - Search Results

1

ArcS from Thermococcus kodakarensis transfers L-lysine to preQ₀ nucleoside derivatives as minimum substrate RNAs.

Fujita S, Sugio Y, Kawamura T, Yamagami R, Oka N, Hirata A, Yokogawa T, Hori H. Fujita S, et al. Among authors: yamagami r. J Biol Chem. 2024 Aug;300(8):107505. doi: 10.1016/j.jbc.2024.107505. Epub 2024 Jun 27. J Biol Chem. 2024. PMID: 38944122 Free PMC article.

2

Application of mutational profiling: New functional analyses reveal the tRNA recognition mechanism of tRNA m¹A22 methyltransferase.

Yamagami R, Hori H. Yamagami R, et al. J Biol Chem. 2023 Jan;299(1):102759. doi: 10.1016/j.jbc.2022.102759. Epub 2022 Dec 1. J Biol Chem. 2023. PMID: 36462666 Free PMC article.

3

The tRNA recognition mechanism of folate/FAD-dependent tRNA methyltransferase (TrmFO).

Yamagami R, Yamashita K, Nishimasu H, Tomikawa C, Ochi A, Iwashita C, Hirata A, Ishitani R, Nureki O, Hori H. Yamagami R, et al. J Biol Chem. 2012 Dec 14;287(51):42480-94. doi: 10.1074/jbc.M112.390112. Epub 2012 Oct 24. J Biol Chem. 2012. PMID: 23095745 Free PMC article.

4

The catalytic domain of topological knot tRNA methyltransferase (TrmH) discriminates between substrate tRNA and nonsubstrate tRNA via an induced-fit process.

Ochi A, Makabe K, Yamagami R, Hirata A, Sakaguchi R, Hou YM, Watanabe K, Nureki O, Kuwajima K, Hori H. Ochi A, et al. Among authors: yamagami r. J Biol Chem. 2013 Aug 30;288(35):25562-25574. doi: 10.1074/jbc.M113.485128. Epub 2013 Jul 18. J Biol Chem. 2013. PMID: 23867454 Free PMC article.

5

A selective and sensitive detection system for 4-thiouridine modification in RNA.

Sugio Y, Yamagami R, Shigi N, Hori H. Sugio Y, et al. Among authors: yamagami r. RNA. 2023 Feb;29(2):241-251. doi: 10.1261/rna.079445.122. Epub 2022 Nov 21. RNA. 2023. PMID: 36411056 Free PMC article.

6

Functional analysis of tRNA modification enzymes using mutational profiling.

Yamagami R, Hori H. Yamagami R, et al. Methods Enzymol. 2023;692:69-101. doi: 10.1016/bs.mie.2023.02.021. Epub 2023 Mar 22. Methods Enzymol. 2023. PMID: 37925188

7

X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity.

Hirata A, Fujishima K, Yamagami R, Kawamura T, Banfield JF, Kanai A, Hori H. Hirata A, et al. Among authors: yamagami r. Nucleic Acids Res. 2012 Nov 1;40(20):10554-66. doi: 10.1093/nar/gks826. Epub 2012 Aug 31. Nucleic Acids Res. 2012. PMID: 22941657 Free PMC article.

8

Improved solid-phase DNA probe method for tRNA purification: large-scale preparation and alteration of DNA fixation.

Kazayama A, Yamagami R, Yokogawa T, Hori H. Kazayama A, et al. Among authors: yamagami r. J Biochem. 2015 May;157(5):411-8. doi: 10.1093/jb/mvu089. Epub 2015 Jan 7. J Biochem. 2015. PMID: 25572528

9

Transfer RNA Modification Enzymes from Thermophiles and Their Modified Nucleosides in tRNA.

Hori H, Kawamura T, Awai T, Ochi A, Yamagami R, Tomikawa C, Hirata A. Hori H, et al. Among authors: yamagami r. Microorganisms. 2018 Oct 20;6(4):110. doi: 10.3390/microorganisms6040110. Microorganisms. 2018. PMID: 30347855 Free PMC article. Review.

10

Required Elements in tRNA for Methylation by the Eukaryotic tRNA (Guanine-N²-) Methyltransferase (Trm11-Trm112 Complex).

Nishida Y, Ohmori S, Kakizono R, Kawai K, Namba M, Okada K, Yamagami R, Hirata A, Hori H. Nishida Y, et al. Among authors: yamagami r. Int J Mol Sci. 2022 Apr 6;23(7):4046. doi: 10.3390/ijms23074046. Int J Mol Sci. 2022. PMID: 35409407 Free PMC article.

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