Yokogawa T - Search Results

1

ArcS from Thermococcus kodakarensis transfers L-lysine to preQ₀ nucleoside derivatives as minimum substrate RNAs.

Fujita S, Sugio Y, Kawamura T, Yamagami R, Oka N, Hirata A, Yokogawa T, Hori H. Fujita S, et al. Among authors: yokogawa t. J Biol Chem. 2024 Aug;300(8):107505. doi: 10.1016/j.jbc.2024.107505. Epub 2024 Jun 27. J Biol Chem. 2024. PMID: 38944122 Free PMC article.

2

Aquifex aeolicus tRNA (N2,N2-guanine)-dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA.

Awai T, Kimura S, Tomikawa C, Ochi A, Ihsanawati, Bessho Y, Yokoyama S, Ohno S, Nishikawa K, Yokogawa T, Suzuki T, Hori H. Awai T, et al. Among authors: yokogawa t. J Biol Chem. 2009 Jul 31;284(31):20467-78. doi: 10.1074/jbc.M109.020024. Epub 2009 Jun 2. J Biol Chem. 2009. PMID: 19491098 Free PMC article.

3

Multisite-specific archaeosine tRNA-guanine transglycosylase (ArcTGT) from Thermoplasma acidophilum, a thermo-acidophilic archaeon.

Kawamura T, Hirata A, Ohno S, Nomura Y, Nagano T, Nameki N, Yokogawa T, Hori H. Kawamura T, et al. Among authors: yokogawa t. Nucleic Acids Res. 2016 Feb 29;44(4):1894-908. doi: 10.1093/nar/gkv1522. Epub 2015 Dec 31. Nucleic Acids Res. 2016. PMID: 26721388 Free PMC article.

4

Identification of a radical SAM enzyme involved in the synthesis of archaeosine.

Yokogawa T, Nomura Y, Yasuda A, Ogino H, Hiura K, Nakada S, Oka N, Ando K, Kawamura T, Hirata A, Hori H, Ohno S. Yokogawa T, et al. Nat Chem Biol. 2019 Dec;15(12):1148-1155. doi: 10.1038/s41589-019-0390-7. Epub 2019 Nov 18. Nat Chem Biol. 2019. PMID: 31740832

5

Improved solid-phase DNA probe method for tRNA purification: large-scale preparation and alteration of DNA fixation.

Kazayama A, Yamagami R, Yokogawa T, Hori H. Kazayama A, et al. Among authors: yokogawa t. J Biochem. 2015 May;157(5):411-8. doi: 10.1093/jb/mvu089. Epub 2015 Jan 7. J Biochem. 2015. PMID: 25572528

To overcome this problem, the use of tetraalkylammonium salts was previously reported [Yokogawa, T., Kitamura, Y., Nakamura, D., Ohno, S., and Nishikawa, K. (2010) Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence …

To overcome this problem, the use of tetraalkylammonium salts was previously reported [Yokogawa, T., Kitamura, Y., Nakamura, D …

6

N7-Methylguanine at position 46 (m7G46) in tRNA from Thermus thermophilus is required for cell viability at high temperatures through a tRNA modification network.

Tomikawa C, Yokogawa T, Kanai T, Hori H. Tomikawa C, et al. Among authors: yokogawa t. Nucleic Acids Res. 2010 Jan;38(3):942-57. doi: 10.1093/nar/gkp1059. Epub 2009 Nov 24. Nucleic Acids Res. 2010. PMID: 19934251 Free PMC article.

7

Purification and comparison of native and recombinant tRNA-guanine transglycosylases from Methanosarcina acetivorans.

Nomura Y, Onda Y, Ohno S, Taniguchi H, Ando K, Oka N, Nishikawa K, Yokogawa T. Nomura Y, et al. Among authors: yokogawa t. Protein Expr Purif. 2013 Mar;88(1):13-9. doi: 10.1016/j.pep.2012.11.009. Epub 2012 Nov 29. Protein Expr Purif. 2013. PMID: 23201278

8

Application of solid-phase DNA probe method with cleavage by deoxyribozyme for analysis of long non-coding RNAs.

Arakawa S, Kamizaki K, Kuwana Y, Kataoka N, Naoe C, Takemoto C, Yokogawa T, Hori H. Arakawa S, et al. Among authors: yokogawa t. J Biochem. 2020 Sep 1;168(3):273-283. doi: 10.1093/jb/mvaa048. J Biochem. 2020. PMID: 32289169

9

Detection of structural changes in a cofactor binding protein by using a wheat germ cell-free protein synthesis system coupled with unnatural amino acid probing.

Abe M, Ohno S, Yokogawa T, Nakanishi T, Arisaka F, Hosoya T, Hiramatsu T, Suzuki M, Ogasawara T, Sawasaki T, Nishikawa K, Kitamura M, Hori H, Endo Y. Abe M, et al. Among authors: yokogawa t. Proteins. 2007 May 15;67(3):643-52. doi: 10.1002/prot.21341. Proteins. 2007. PMID: 17348022

10

Characterization and tRNA recognition of mammalian mitochondrial seryl-tRNA synthetase.

Yokogawa T, Shimada N, Takeuchi N, Benkowski L, Suzuki T, Omori A, Ueda T, Nishikawa K, Spremulli LL, Watanabe K. Yokogawa T, et al. J Biol Chem. 2000 Jun 30;275(26):19913-20. doi: 10.1074/jbc.M908473199. J Biol Chem. 2000. PMID: 10764807 Free article.

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