Ma X - Search Results

1

Spatial Landscape of Malignant Pleural and Peritoneal Mesothelioma Tumor Immune Microenvironments.

Ma X, Lembersky D, Kim ES, Becich MJ, Testa JR, Bruno TC, Osmanbeyoglu HU. Ma X, et al. Cancer Res Commun. 2024 Aug 1;4(8):2133-2146. doi: 10.1158/2767-9764.CRC-23-0524. Cancer Res Commun. 2024. PMID: 38994676 Free PMC article.

2

SPaRTAN, a computational framework for linking cell-surface receptors to transcriptional regulators.

Ma X, Somasundaram A, Qi Z, Hartman DJ, Singh H, Osmanbeyoglu HU. Ma X, et al. Nucleic Acids Res. 2021 Sep 27;49(17):9633-9647. doi: 10.1093/nar/gkab745. Nucleic Acids Res. 2021. PMID: 34500467 Free PMC article.

3

Interpretable deep learning for chromatin-informed inference of transcriptional programs driven by somatic alterations across cancers.

Tao Y, Ma X, Palmer D, Schwartz R, Lu X, Osmanbeyoglu HU. Tao Y, et al. Among authors: ma x. Nucleic Acids Res. 2022 Oct 28;50(19):10869-10881. doi: 10.1093/nar/gkac881. Nucleic Acids Res. 2022. PMID: 36243974 Free PMC article.

4

COVID-19db linkage maps of cell surface proteins and transcription factors in immune cells.

Ramjattun K, Ma X, Gao SJ, Singh H, Osmanbeyoglu HU. Ramjattun K, et al. Among authors: ma x. J Med Virol. 2023 Jun;95(6):e28887. doi: 10.1002/jmv.28887. J Med Virol. 2023. PMID: 37341527 Free PMC article.

5

Linking Expression of Cell-Surface Receptors with Transcription Factors by Computational Analysis of Paired Single-Cell Proteomes and Transcriptomes.

Sagan A, Ma X, Ramjattun K, Osmanbeyoglu HU. Sagan A, et al. Among authors: ma x. Methods Mol Biol. 2023;2660:149-169. doi: 10.1007/978-1-0716-3163-8_11. Methods Mol Biol. 2023. PMID: 37191796

6

Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference.

Cai C, Cooper GF, Lu KN, Ma X, Xu S, Zhao Z, Chen X, Xue Y, Lee AV, Clark N, Chen V, Lu S, Chen L, Yu L, Hochheiser HS, Jiang X, Wang QJ, Lu X. Cai C, et al. Among authors: ma x. PLoS Comput Biol. 2019 Jul 5;15(7):e1007088. doi: 10.1371/journal.pcbi.1007088. eCollection 2019 Jul. PLoS Comput Biol. 2019. PMID: 31276486 Free PMC article.

7

Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes.

Xue Y, Cooper G, Cai C, Lu S, Hu B, Ma X, Lu X. Xue Y, et al. Among authors: ma x. Sci Rep. 2019 Sep 13;9(1):13225. doi: 10.1038/s41598-019-48318-7. Sci Rep. 2019. PMID: 31519988 Free PMC article.

8

Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets.

Lu S, Lu KN, Cheng SY, Hu B, Ma X, Nystrom N, Lu X. Lu S, et al. Among authors: ma x. PLoS Comput Biol. 2015 Aug 28;11(8):e1004257. doi: 10.1371/journal.pcbi.1004257. eCollection 2015 Aug. PLoS Comput Biol. 2015. PMID: 26317392 Free PMC article.

9

A Novel Bayesian Framework Infers Driver Activation States and Reveals Pathway-Oriented Molecular Subtypes in Head and Neck Cancer.

Liu Z, Cai C, Ma X, Liu J, Chen L, Lui VWY, Cooper GF, Lu X. Liu Z, et al. Among authors: ma x. Cancers (Basel). 2022 Oct 3;14(19):4825. doi: 10.3390/cancers14194825. Cancers (Basel). 2022. PMID: 36230748 Free PMC article.

10

STMGraph: spatial-context-aware of transcriptomes via a dual-remasked dynamic graph attention model.

Lin L, Wang H, Chen Y, Wang Y, Xu Y, Chen Z, Yang Y, Liu K, Ma X. Lin L, et al. Among authors: ma x. Brief Bioinform. 2024 Nov 22;26(1):bbae685. doi: 10.1093/bib/bbae685. Brief Bioinform. 2024. PMID: 39764614

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