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Page 1
PeakQC: A Software Tool for Omics-Agnostic Automated Quality Control of Mass Spectrometry Data.
Harrison A, Eder JG, Lalli PM, Munoz N, Gao Y, Clendinen CS, Orton DJ, Zheng X, Williams SM, Couvillion SP, Chu RK, Balasubramanian VK, Bhattacharjee A, Anderton CR, Pomraning KR, Burnum-Johnson KE, Liu T, Kyle JE, Bilbao A. Harrison A, et al. Among authors: pomraning kr. J Am Soc Mass Spectrom. 2024 Jul 16. doi: 10.1021/jasms.4c00146. Online ahead of print. J Am Soc Mass Spectrom. 2024. PMID: 39013167
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR. Czajka JJ, et al. Among authors: pomraning kr. Front Bioeng Biotechnol. 2024 Apr 4;12:1356551. doi: 10.3389/fbioe.2024.1356551. eCollection 2024. Front Bioeng Biotechnol. 2024. PMID: 38638323 Free PMC article.
Identification of a specific exporter that enables high production of aconitic acid in Aspergillus pseudoterreus.
Deng S, Kim J, Pomraning KR, Gao Y, Evans JE, Hofstad BA, Dai Z, Webb-Robertson BJ, Powell SM, Novikova IV, Munoz N, Kim YM, Swita M, Robles AL, Lemmon T, Duong RD, Nicora C, Burnum-Johnson KE, Magnuson J. Deng S, et al. Among authors: pomraning kr. Metab Eng. 2023 Nov;80:163-172. doi: 10.1016/j.ymben.2023.09.011. Epub 2023 Sep 29. Metab Eng. 2023. PMID: 37778408 Free article.
Rapid and robust squashed spore/colony PCR of industrially important fungi.
Yuan G, Czajka JJ, Dai Z, Hu D, Pomraning KR, Hofstad BA, Kim J, Robles AL, Deng S, Magnuson JK. Yuan G, et al. Among authors: pomraning kr. Fungal Biol Biotechnol. 2023 Jul 8;10(1):15. doi: 10.1186/s40694-023-00163-0. Fungal Biol Biotechnol. 2023. PMID: 37422681 Free PMC article.
Engineering Rhodosporidium toruloides for production of 3-hydroxypropionic acid from lignocellulosic hydrolysate.
Liu D, Hwang HJ, Otoupal PB, Geiselman GM, Kim J, Pomraning KR, Kim YM, Munoz N, Nicora CD, Gao Y, Burnum-Johnson KE, Jacobson O, Coradetti S, Kim J, Deng S, Dai Z, Prahl JP, Tanjore D, Lee TS, Magnuson JK, Gladden JM. Liu D, et al. Among authors: pomraning kr. Metab Eng. 2023 Jul;78:72-83. doi: 10.1016/j.ymben.2023.05.001. Epub 2023 May 16. Metab Eng. 2023. PMID: 37201565
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements.
Bilbao A, Munoz N, Kim J, Orton DJ, Gao Y, Poorey K, Pomraning KR, Weitz K, Burnet M, Nicora CD, Wilton R, Deng S, Dai Z, Oksen E, Gee A, Fasani RA, Tsalenko A, Tanjore D, Gardner J, Smith RD, Michener JK, Gladden JM, Baker ES, Petzold CJ, Kim YM, Apffel A, Magnuson JK, Burnum-Johnson KE. Bilbao A, et al. Among authors: pomraning kr. Nat Commun. 2023 Apr 28;14(1):2461. doi: 10.1038/s41467-023-37031-9. Nat Commun. 2023. PMID: 37117207 Free PMC article.
40 results