Ren C - Search Results

1

CGMega: explainable graph neural network framework with attention mechanisms for cancer gene module dissection.

Li H, Han Z, Sun Y, Wang F, Hu P, Gao Y, Bai X, Peng S, Ren C, Xu X, Liu Z, Chen H, Yang Y, Bo X. Li H, et al. Among authors: ren c. Nat Commun. 2024 Jul 17;15(1):5997. doi: 10.1038/s41467-024-50426-6. Nat Commun. 2024. PMID: 39013885 Free PMC article.

2

Functional annotation of HOT regions in the human genome: implications for human disease and cancer.

Li H, Chen H, Liu F, Ren C, Wang S, Bo X, Shu W. Li H, et al. Among authors: ren c. Sci Rep. 2015 Jun 26;5:11633. doi: 10.1038/srep11633. Sci Rep. 2015. PMID: 26113264 Free PMC article.

3

De novo identification of replication-timing domains in the human genome by deep learning.

Liu F, Ren C, Li H, Zhou P, Bo X, Shu W. Liu F, et al. Among authors: ren c. Bioinformatics. 2016 Mar 1;32(5):641-9. doi: 10.1093/bioinformatics/btv643. Epub 2015 Nov 5. Bioinformatics. 2016. PMID: 26545821 Free PMC article.

4

PEDLA: predicting enhancers with a deep learning-based algorithmic framework.

Liu F, Li H, Ren C, Bo X, Shu W. Liu F, et al. Among authors: ren c. Sci Rep. 2016 Jun 22;6:28517. doi: 10.1038/srep28517. Sci Rep. 2016. PMID: 27329130 Free PMC article.

5

Genome-wide identification and characterisation of HOT regions in the human genome.

Li H, Liu F, Ren C, Bo X, Shu W. Li H, et al. Among authors: ren c. BMC Genomics. 2016 Sep 15;17(1):733. doi: 10.1186/s12864-016-3077-4. BMC Genomics. 2016. PMID: 27633377 Free PMC article.

6

iFORM: Incorporating Find Occurrence of Regulatory Motifs.

Ren C, Chen H, Yang B, Liu F, Ouyang Z, Bo X, Shu W. Ren C, et al. PLoS One. 2016 Dec 19;11(12):e0168607. doi: 10.1371/journal.pone.0168607. eCollection 2016. PLoS One. 2016. PMID: 27992540 Free PMC article.

7

BiRen: predicting enhancers with a deep-learning-based model using the DNA sequence alone.

Yang B, Liu F, Ren C, Ouyang Z, Xie Z, Bo X, Shu W. Yang B, et al. Among authors: ren c. Bioinformatics. 2017 Jul 1;33(13):1930-1936. doi: 10.1093/bioinformatics/btx105. Bioinformatics. 2017. PMID: 28334114

8

Lnc2Catlas: an atlas of long noncoding RNAs associated with risk of cancers.

Ren C, An G, Zhao C, Ouyang Z, Bo X, Shu W. Ren C, et al. Sci Rep. 2018 Jan 30;8(1):1909. doi: 10.1038/s41598-018-20232-4. Sci Rep. 2018. PMID: 29382910 Free PMC article.

9

Accurate identification of RNA editing sites from primitive sequence with deep neural networks.

Ouyang Z, Liu F, Zhao C, Ren C, An G, Mei C, Bo X, Shu W. Ouyang Z, et al. Among authors: ren c. Sci Rep. 2018 Apr 16;8(1):6005. doi: 10.1038/s41598-018-24298-y. Sci Rep. 2018. PMID: 29662087 Free PMC article.

10

LIVE: a manually curated encyclopedia of experimentally validated interactions of lncRNAs.

An G, Sun J, Ren C, Ouyang Z, Zhu L, Bo X, Peng S, Shu W. An G, et al. Among authors: ren c. Database (Oxford). 2019 Jan 1;2019:baz011. doi: 10.1093/database/baz011. Database (Oxford). 2019. PMID: 30759219 Free PMC article.

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