Patil S - Search Results

1

Tumor Subtype Classification Tool for HPV-associated Head and Neck Cancers.

Li S, Garb BF, Qin T, Soppe S, Lopez E, Patil S, D'Silva NJ, Rozek LS, Sartor MA. Li S, et al. Among authors: patil s. bioRxiv [Preprint]. 2024 Jul 10:2024.07.05.601906. doi: 10.1101/2024.07.05.601906. bioRxiv. 2024. PMID: 39026719 Free PMC article. Preprint.

2

RNA-Enrich: a cut-off free functional enrichment testing method for RNA-seq with improved detection power.

Lee C, Patil S, Sartor MA. Lee C, et al. Among authors: patil s. Bioinformatics. 2016 Apr 1;32(7):1100-2. doi: 10.1093/bioinformatics/btv694. Epub 2015 Nov 25. Bioinformatics. 2016. PMID: 26607492 Free PMC article.

3

Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data.

Qin T, Lee C, Li S, Cavalcante RG, Orchard P, Yao H, Zhang H, Wang S, Patil S, Boyle AP, Sartor MA. Qin T, et al. Among authors: patil s. Genome Biol. 2022 Apr 26;23(1):105. doi: 10.1186/s13059-022-02668-0. Genome Biol. 2022. PMID: 35473573 Free PMC article.

4

Integrating DNA Methylation and Hydroxymethylation Data with the Mint Pipeline.

Cavalcante RG, Patil S, Park Y, Rozek LS, Sartor MA. Cavalcante RG, et al. Among authors: patil s. Cancer Res. 2017 Nov 1;77(21):e27-e30. doi: 10.1158/0008-5472.CAN-17-0330. Cancer Res. 2017. PMID: 29092933 Free PMC article.

5

Poly-Enrich: count-based methods for gene set enrichment testing with genomic regions.

Lee CT, Cavalcante RG, Lee C, Qin T, Patil S, Wang S, Tsai ZTY, Boyle AP, Sartor MA. Lee CT, et al. Among authors: patil s. NAR Genom Bioinform. 2020 Mar;2(1):lqaa006. doi: 10.1093/nargab/lqaa006. Epub 2020 Feb 6. NAR Genom Bioinform. 2020. PMID: 32051932 Free PMC article.

6

ChIP-Enrich: gene set enrichment testing for ChIP-seq data.

Welch RP, Lee C, Imbriano PM, Patil S, Weymouth TE, Smith RA, Scott LJ, Sartor MA. Welch RP, et al. Among authors: patil s. Nucleic Acids Res. 2014 Jul;42(13):e105. doi: 10.1093/nar/gku463. Epub 2014 May 30. Nucleic Acids Res. 2014. PMID: 24878920 Free PMC article.

7

Universal concept signature analysis: genome-wide quantification of new biological and pathological functions of genes and pathways.

Chi X, Sartor MA, Lee S, Anurag M, Patil S, Hall P, Wexler M, Wang XS. Chi X, et al. Among authors: patil s. Brief Bioinform. 2020 Sep 25;21(5):1717-1732. doi: 10.1093/bib/bbz093. Brief Bioinform. 2020. PMID: 31631213 Free PMC article.

8

Broad-Enrich: functional interpretation of large sets of broad genomic regions.

Cavalcante RG, Lee C, Welch RP, Patil S, Weymouth T, Scott LJ, Sartor MA. Cavalcante RG, et al. Among authors: patil s. Bioinformatics. 2014 Sep 1;30(17):i393-400. doi: 10.1093/bioinformatics/btu444. Bioinformatics. 2014. PMID: 25161225 Free PMC article.

9

ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts.

Cavalcante RG, Patil S, Weymouth TE, Bendinskas KG, Karnovsky A, Sartor MA. Cavalcante RG, et al. Among authors: patil s. Bioinformatics. 2016 May 15;32(10):1536-43. doi: 10.1093/bioinformatics/btw016. Epub 2016 Jan 21. Bioinformatics. 2016. PMID: 26794319 Free PMC article.

10

Efficacy of Bilastine, Dextromethorphan, and Phenylephrine Syrup in Patients With Dry Cough: A Phase 3 Randomised Trial.

Kodgule R, Magar P, Shivnitwar SK, Wu W, Pendse A, Creado S, Patil S, Barkate H, Tandon M. Kodgule R, et al. Among authors: patil s. Cureus. 2024 Dec 16;16(12):e75836. doi: 10.7759/cureus.75836. eCollection 2024 Dec. Cureus. 2024. PMID: 39822435 Free PMC article.

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