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Page 1
The regulatory potential of transposable elements in maize.
Bubb KL, Hamm MO, Min JK, Ramirez-Corona B, Mueth NA, Ranchalis J, Vollger MR, Trapnell C, Cuperus JT, Queitsch C, Stergachis AB. Bubb KL, et al. Among authors: stergachis ab. bioRxiv [Preprint]. 2024 Jul 14:2024.07.10.602892. doi: 10.1101/2024.07.10.602892. bioRxiv. 2024. PMID: 39026747 Free PMC article. Preprint.
Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana.
Sullivan AM, Arsovski AA, Lempe J, Bubb KL, Weirauch MT, Sabo PJ, Sandstrom R, Thurman RE, Neph S, Reynolds AP, Stergachis AB, Vernot B, Johnson AK, Haugen E, Sullivan ST, Thompson A, Neri FV 3rd, Weaver M, Diegel M, Mnaimneh S, Yang A, Hughes TR, Nemhauser JL, Queitsch C, Stamatoyannopoulos JA. Sullivan AM, et al. Among authors: stergachis ab. Cell Rep. 2014 Sep 25;8(6):2015-2030. doi: 10.1016/j.celrep.2014.08.019. Epub 2014 Sep 15. Cell Rep. 2014. PMID: 25220462 Free article.
DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools.
Jha A, Bohaczuk SC, Mao Y, Ranchalis J, Mallory BJ, Min AT, Hamm MO, Swanson E, Dubocanin D, Finkbeiner C, Li T, Whittington D, Noble WS, Stergachis AB, Vollger MR. Jha A, et al. Among authors: stergachis ab. bioRxiv [Preprint]. 2023 Dec 11:2023.04.20.537673. doi: 10.1101/2023.04.20.537673. bioRxiv. 2023. Update in: Genome Res. 2024 Nov 20;34(11):1976-1986. doi: 10.1101/gr.279095.124 PMID: 37131601 Free PMC article. Updated. Preprint.
Resolving the chromatin impact of mosaic variants with targeted Fiber-seq.
Bohaczuk SC, Amador ZJ, Li C, Mallory BJ, Swanson EG, Ranchalis J, Vollger MR, Munson KM, Walsh T, Hamm MO, Mao Y, Lieber A, Stergachis AB. Bohaczuk SC, et al. Among authors: stergachis ab. bioRxiv [Preprint]. 2024 Jul 13:2024.07.09.602608. doi: 10.1101/2024.07.09.602608. bioRxiv. 2024. Update in: Genome Res. 2024 Dec 23;34(12):2269-2278. doi: 10.1101/gr.279747.124 PMID: 39026856 Free PMC article. Updated. Preprint.
Centromeric transposable elements and epigenetic status drive karyotypic variation in the eastern hoolock gibbon.
Hartley GA, Okhovat M, Hoyt SJ, Fuller E, Pauloski N, Alexandre N, Alexandrov I, Drennan R, Dubocanin D, Gilbert DM, Mao Y, McCann C, Neph S, Ryabov F, Sasaki T, Storer JM, Svendsen D, Troy W, Wells J, Core L, Stergachis A, Carbone L, O'Neill RJ. Hartley GA, et al. bioRxiv [Preprint]. 2024 Aug 30:2024.08.29.610280. doi: 10.1101/2024.08.29.610280. bioRxiv. 2024. PMID: 39257810 Free PMC article. Preprint.
Single chromatin fiber profiling and nucleosome position mapping in the human brain.
Peter CJ, Agarwal A, Watanabe R, Kassim BS, Wang X, Lambert TY, Javidfar B, Evans V, Dawson T, Fridrikh M, Girdhar K, Roussos P, Nageshwaran SK, Tsankova NM, Sebra RP, Vollger MR, Stergachis AB, Hasson D, Akbarian S. Peter CJ, et al. Among authors: stergachis ab. Cell Rep Methods. 2024 Dec 16;4(12):100911. doi: 10.1016/j.crmeth.2024.100911. Epub 2024 Dec 3. Cell Rep Methods. 2024. PMID: 39631398 Free PMC article.
Resolving the chromatin impact of mosaic variants with targeted Fiber-seq.
Bohaczuk SC, Amador ZJ, Li C, Mallory BJ, Swanson EG, Ranchalis J, Vollger MR, Munson KM, Walsh T, Hamm MO, Mao Y, Lieber A, Stergachis AB. Bohaczuk SC, et al. Among authors: stergachis ab. Genome Res. 2024 Dec 23;34(12):2269-2278. doi: 10.1101/gr.279747.124. Genome Res. 2024. PMID: 39653420
49 results