Xie J - Search Results

1

Cross-Modal Graph Contrastive Learning with Cellular Images.

Zheng S, Rao J, Zhang J, Zhou L, Xie J, Cohen E, Lu W, Li C, Yang Y. Zheng S, et al. Among authors: xie j. Adv Sci (Weinh). 2024 Aug;11(32):e2404845. doi: 10.1002/advs.202404845. Epub 2024 Jun 21. Adv Sci (Weinh). 2024. PMID: 39031820 Free PMC article.

2

Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion.

Yuan Q, Xie J, Xie J, Zhao H, Yang Y. Yuan Q, et al. Among authors: xie j. Brief Bioinform. 2023 May 19;24(3):bbad117. doi: 10.1093/bib/bbad117. Brief Bioinform. 2023. PMID: 36964722

3

From intuition to AI: evolution of small molecule representations in drug discovery.

McGibbon M, Shave S, Dong J, Gao Y, Houston DR, Xie J, Yang Y, Schwaller P, Blay V. McGibbon M, et al. Among authors: xie j. Brief Bioinform. 2023 Nov 22;25(1):bbad422. doi: 10.1093/bib/bbad422. Brief Bioinform. 2023. PMID: 38033290 Free PMC article.

4

Predicting disease-gene associations through self-supervised mutual infomax graph convolution network.

Xie J, Rao J, Xie J, Zhao H, Yang Y. Xie J, et al. Comput Biol Med. 2024 Mar;170:108048. doi: 10.1016/j.compbiomed.2024.108048. Epub 2024 Jan 30. Comput Biol Med. 2024. PMID: 38310804

5

Self-Supervised Contrastive Molecular Representation Learning with a Chemical Synthesis Knowledge Graph.

Xie J, Wang Y, Rao J, Zheng S, Yang Y. Xie J, et al. J Chem Inf Model. 2024 Mar 25;64(6):1945-1954. doi: 10.1021/acs.jcim.4c00157. Epub 2024 Mar 14. J Chem Inf Model. 2024. PMID: 38484468

6

A variational expectation-maximization framework for balanced multi-scale learning of protein and drug interactions.

Rao J, Xie J, Yuan Q, Liu D, Wang Z, Lu Y, Zheng S, Yang Y. Rao J, et al. Among authors: xie j. Nat Commun. 2024 May 25;15(1):4476. doi: 10.1038/s41467-024-48801-4. Nat Commun. 2024. PMID: 38796523 Free PMC article.

7

An interpretable survival model for diffuse large B-cell lymphoma patients using a biologically informed visible neural network.

Tan J, Xie J, Huang J, Deng W, Chai H, Yang Y. Tan J, et al. Among authors: xie j. Comput Struct Biotechnol J. 2024 Jul 24;24:523-532. doi: 10.1016/j.csbj.2024.07.019. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 39211335 Free PMC article.

8

The m⁷G Reader NCBP2 Promotes Pancreatic Cancer Progression by Upregulating MAPK/ERK Signaling.

Xie J, Mo T, Li R, Zhang H, Liang G, Ma T, Chen J, Xie H, Wen X, Hu T, Xian Z, Pan W. Xie J, et al. Among authors: xie h. Cancers (Basel). 2023 Nov 17;15(22):5454. doi: 10.3390/cancers15225454. Cancers (Basel). 2023. PMID: 38001714 Free PMC article.

9

Circ_0020256 induces fibroblast activation to drive cholangiocarcinoma development via recruitment of EIF4A3 protein to stabilize KLF4 mRNA.

Li Z, Chen Z, Li S, Qian X, Zhang L, Long G, Xie J, Huang X, Zheng Z, Pan W, Li H, Zhang D. Li Z, et al. Among authors: xie j. Cell Death Discov. 2023 May 13;9(1):161. doi: 10.1038/s41420-023-01439-5. Cell Death Discov. 2023. PMID: 37179359 Free PMC article.

10

Immunogenic cell death-associated biomarkers classification predicts prognosis and immunotherapy efficacy in pancreatic ductal adenocarcinoma.

Peng W, Yang J, Xia L, Qian X, Long G, Zhang H, Xie J, Zhao J, Zhang L, Pan W. Peng W, et al. Among authors: xie j. Front Oncol. 2023 Mar 30;13:1178966. doi: 10.3389/fonc.2023.1178966. eCollection 2023. Front Oncol. 2023. PMID: 37064149 Free PMC article.

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