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Ecology meets reproductive medicine in HIV prevention: the case for geography-informed approaches for bacterial vaginosis in Africa.
Passmore JS, Ngcapu S, Gitome S, Kullin BR, Welp K, Martin DP, Potloane D, Manhanzva MT, Obimbo MM, Gill K, Fevre ML, Happel AU, Jaspan HB, Kasaro M, Bukusi EA. Passmore JS, et al. Among authors: martin dp. Front Reprod Health. 2024 Nov 27;6:1431306. doi: 10.3389/frph.2024.1431306. eCollection 2024. Front Reprod Health. 2024. PMID: 39665036 Free PMC article. Review.
Viral genome sequence datasets display pervasive evidence of strand-specific substitution biases that are best described using non-reversible nucleotide substitution models.
Sianga-Mete R, Hartnady P, Mandikumba WC, Rutherford K, Currin CB, Phelanyane F, Stefan S, Kosakovsky Pond SL, Martin DP. Sianga-Mete R, et al. Among authors: martin dp. Res Sq [Preprint]. 2022 Dec 29:rs.3.rs-2407778. doi: 10.21203/rs.3.rs-2407778/v1. Res Sq. 2022. PMID: 36597548 Free PMC article. Preprint.
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.
Martin DP, Lytras S, Lucaci AG, Maier W, Grüning B, Shank SD, Weaver S, MacLean OA, Orton RJ, Lemey P, Boni MF, Tegally H, Harkins G, Scheepers C, Bhiman JN, Everatt J, Amoako DG, San JE, Giandhari J, Sigal A; NGS-SA; Williamson C, Hsiao NY, von Gottberg A, De Klerk A, Shafer RW, Robertson DL, Wilkinson RJ, Sewell BT, Lessells R, Nekrutenko A, Greaney AJ, Starr TN, Bloom JD, Murrell B, Wilkinson E, Gupta RK, de Oliveira T, Kosakovsky Pond SL. Martin DP, et al. bioRxiv [Preprint]. 2022 Jan 18:2022.01.14.476382. doi: 10.1101/2022.01.14.476382. bioRxiv. 2022. Update in: Mol Biol Evol. 2022 Apr 11;39(4):msac061. doi: 10.1093/molbev/msac061 PMID: 35075456 Free PMC article. Updated. Preprint.
Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring.
Maier W, Bray S, van den Beek M, Bouvier D, Coraor N, Miladi M, Singh B, De Argila JR, Baker D, Roach N, Gladman S, Coppens F, Martin DP, Lonie A, Grüning B, Kosakovsky Pond SL, Nekrutenko A. Maier W, et al. Among authors: martin dp. bioRxiv [Preprint]. 2021 Mar 25:2021.03.25.437046. doi: 10.1101/2021.03.25.437046. bioRxiv. 2021. Update in: Nat Biotechnol. 2021 Oct;39(10):1178-1179. doi: 10.1038/s41587-021-01069-1 PMID: 33791701 Free PMC article. Updated. Preprint.
Emergence of Omicron FN.1 a descendent of BQ.1.1 in Botswana.
Choga WT, Gustani-Buss E, Tegally H, Maruapula D, Yu X, Moir M, Zuze BJL, James SE, Ndlovu NS, Seru K, Motshosi P, Blenkinsop A, Gobe I, Baxter C, Manasa J, Lockman S, Shapiro R, Makhema J, Wilkinson E, Blackard JT, Lemey P, Lessells RJ, Martin DP, de Oliveira T, Gaseitsiwe S, Moyo S. Choga WT, et al. Among authors: martin dp. Virus Evol. 2024 Nov 22;10(1):veae095. doi: 10.1093/ve/veae095. eCollection 2024. Virus Evol. 2024. PMID: 39720788 Free PMC article.
Increase of niche filling with increase of host richness for plant-infecting mastreviruses.
Ben Chéhida S, Devi Bunwaree H, Hoareau M, Moubset O, Julian C, Blondin L, Filloux D, Lavergne C, Roumagnac P, Varsani A, Martin DP, Lett JM, Lefeuvre P. Ben Chéhida S, et al. Among authors: martin dp. Virus Evol. 2024 Dec 13;10(1):veae107. doi: 10.1093/ve/veae107. eCollection 2024. Virus Evol. 2024. PMID: 39717705 Free PMC article.
Novel lineage of anelloviruses with large genomes identified in dolphins.
De Koch MD, Krupovic M, Fielding R, Smith K, Schiavone K, Hall KR, Reid VS, Boyea D, Smith EL, Schmidlin K, Fontenele RS, Koonin EV, Martin DP, Kraberger S, Varsani A. De Koch MD, et al. Among authors: martin dp. J Virol. 2024 Dec 12:e0137024. doi: 10.1128/jvi.01370-24. Online ahead of print. J Virol. 2024. PMID: 39665547 Free article.
627 results