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Page 1
Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation.
Theobald S, Vesth TC, Geib E, Nybo JL, Frisvad JC, Larsen TO, Kuo A, LaButti K, Lyhne EK, Kjærbølling I, Ledsgaard L, Barry K, Clum A, Chen C, Nolan M, Sandor L, Lipzen A, Mondo S, Pangilinan J, Salamov A, Riley R, Wiebenga A, Müller A, Kun RS, Dos Santos Gomes AC, Henrissat B, Magnuson JK, Simmons BA, Mäkelä MR, Mortensen UH, Grigoriev IV, Brock M, Baker SE, de Vries RP, Andersen MR. Theobald S, et al. Among authors: clum a. J Fungi (Basel). 2024 Jul 22;10(7):507. doi: 10.3390/jof10070507. J Fungi (Basel). 2024. PMID: 39057392 Free PMC article.
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium; Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. Bowers RM, et al. Among authors: clum a. Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. Nat Biotechnol. 2018. PMID: 29979671 Free PMC article. No abstract available.
Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe.
Piatkowski BT, Carper DL, Carrell AA, Chen IA, Clum A, Daum C, Eloe-Fadrosh EA, Gilbert D, Granath G, Huntemann M, Jawdy SS, Klarenberg IJ, Kostka JE, Kyrpides NC, Lawrence TJ, Mukherjee S, Nilsson MB, Palaniappan K, Pelletier DA, Pennacchio C, Reddy TBK, Roux S, Shaw AJ, Warshan D, Živković T, Weston DJ. Piatkowski BT, et al. Among authors: clum a. Microbiol Resour Announc. 2022 Oct 20;11(10):e0040022. doi: 10.1128/mra.00400-22. Epub 2022 Sep 7. Microbiol Resour Announc. 2022. PMID: 36069554 Free PMC article.
Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome.
Bell TH, Trexler RV, Peng X, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Ivanova NN, Kyrpides NC, Pennacchio C, Eloe-Fadrosh EA, Bruns MA. Bell TH, et al. Among authors: clum a. Microbiol Resour Announc. 2020 Jan 2;9(1):e01361-19. doi: 10.1128/MRA.01361-19. Microbiol Resour Announc. 2020. PMID: 31896648 Free PMC article.
Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP).
Clum A, Nolan M, Lang E, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavrommatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Göker M, Spring S, Land M, Hauser L, Chang YJ, Jeffries CC, Chain P, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Clum A, et al. Stand Genomic Sci. 2009 Jul 20;1(1):38-45. doi: 10.4056/sigs.1463. Stand Genomic Sci. 2009. PMID: 21304635 Free PMC article.
Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.
Högfors-Rönnholm E, Lopez-Fernandez M, Christel S, Brambilla D, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Harmon-Smith M, Eloe-Fadrosh EA, Lundin D, Engblom S, Dopson M. Högfors-Rönnholm E, et al. Among authors: clum a. Sci Data. 2019 Oct 16;6(1):207. doi: 10.1038/s41597-019-0222-3. Sci Data. 2019. PMID: 31619684 Free PMC article.
High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada.
Ganji R, Murugapiran SK, Ong JC, Manoharan N, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Duffy K, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Dodsworth JA, Hedlund BP. Ganji R, et al. Among authors: clum a. Genome Announc. 2016 Oct 20;4(5):e01112-16. doi: 10.1128/genomeA.01112-16. Genome Announc. 2016. PMID: 27795267 Free PMC article.
Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm.
Woo HL, O'Dell KB, Utturkar S, McBride KR, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Brown SD, Hazen TC. Woo HL, et al. Among authors: clum a. Genome Announc. 2016 Nov 23;4(6):e01297-16. doi: 10.1128/genomeA.01297-16. Genome Announc. 2016. PMID: 27881538 Free PMC article.
Phased diploid genome assembly with single-molecule real-time sequencing.
Chin CS, Peluso P, Sedlazeck FJ, Nattestad M, Concepcion GT, Clum A, Dunn C, O'Malley R, Figueroa-Balderas R, Morales-Cruz A, Cramer GR, Delledonne M, Luo C, Ecker JR, Cantu D, Rank DR, Schatz MC. Chin CS, et al. Among authors: clum a. Nat Methods. 2016 Dec;13(12):1050-1054. doi: 10.1038/nmeth.4035. Epub 2016 Oct 17. Nat Methods. 2016. PMID: 27749838 Free PMC article.
Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters.
Rice MC, Norton JM, Stein LY, Kozlowski J, Bollmann A, Klotz MG, Sayavedra-Soto L, Shapiro N, Goodwin LA, Huntemann M, Clum A, Pillay M, Varghese N, Mikhailova N, Palaniappan K, Ivanova N, Mukherjee S, Reddy TB, Yee Ngan C, Daum C, Kyrpides N, Woyke T. Rice MC, et al. Among authors: clum a. Genome Announc. 2017 Mar 16;5(11):e00011-17. doi: 10.1128/genomeA.00011-17. Genome Announc. 2017. PMID: 28302769 Free PMC article.
119 results