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Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens.
Wang MX, Lou EG, Sapoval N, Kim E, Kalvapalle P, Kille B, Elworth RAL, Liu Y, Fu Y, Stadler LB, Treangen TJ. Wang MX, et al. Among authors: lou eg. bioRxiv [Preprint]. 2023 Sep 30:2023.02.11.528155. doi: 10.1101/2023.02.11.528155. bioRxiv. 2023. Update in: Nat Commun. 2024 Jul 26;15(1):6306. doi: 10.1038/s41467-024-49957-9 PMID: 36824759 Free PMC article. Updated. Preprint.
QuaID: Enabling Earlier Detection of Recently Emerged SARS-CoV-2 Variants of Concern in Wastewater.
Sapoval N, Liu Y, Lou EG, Hopkins L, Ensor KB, Schneider R, Stadler LB, Treangen TJ. Sapoval N, et al. Among authors: lou eg. medRxiv [Preprint]. 2022 Aug 4:2021.09.08.21263279. doi: 10.1101/2021.09.08.21263279. medRxiv. 2022. Update in: Nat Commun. 2023 May 17;14(1):2834. doi: 10.1038/s41467-023-38184-3 PMID: 35898338 Free PMC article. Updated. Preprint.