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signifinder enables the identification of tumor cell states and cancer expression signatures in bulk, single-cell and spatial transcriptomic data.
Pirrotta S, Masatti L, Corrà A, Pedrini F, Esposito G, Martini P, Risso D, Romualdi C, Calura E. Pirrotta S, et al. Among authors: masatti l. bioRxiv [Preprint]. 2023 Mar 10:2023.03.07.530940. doi: 10.1101/2023.03.07.530940. bioRxiv. 2023. Update in: NAR Genom Bioinform. 2024 Oct 03;6(4):lqae138. doi: 10.1093/nargab/lqae138 PMID: 36945491 Free PMC article. Updated. Preprint.
Exploring public cancer gene expression signatures across bulk, single-cell and spatial transcriptomics data with signifinder Bioconductor package.
Pirrotta S, Masatti L, Bortolato A, Corrà A, Pedrini F, Aere M, Esposito G, Martini P, Risso D, Romualdi C, Calura E. Pirrotta S, et al. Among authors: masatti l. NAR Genom Bioinform. 2024 Oct 3;6(4):lqae138. doi: 10.1093/nargab/lqae138. eCollection 2024 Sep. NAR Genom Bioinform. 2024. PMID: 39363890 Free PMC article.