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Interactome of the HIV-1 proteome and human host RNA.
Schynkel T, Snippenberg WV, Verniers K, Jang GM, Krogan NJ, Mestdagh P, Vandekerckhove L, Trypsteen W. Schynkel T, et al. Among authors: verniers k. EMBO Rep. 2024 Sep;25(9):4078-4090. doi: 10.1038/s44319-024-00222-6. Epub 2024 Aug 9. EMBO Rep. 2024. PMID: 39122863 Free PMC article.
Subpar reporting of pre-analytical variables in RNA-focused blood plasma studies.
Van Der Schueren C, Decruyenaere P, Avila Cobos F, Bult J, Deleu J, Dipalo LL, Helsmoortel HH, Hulstaert E, Morlion A, Ramos Varas E, Schoofs K, Trypsteen W, Vanden Eynde E, Van Droogenbroeck H, Verniers K, Vandesompele J, Decock A. Van Der Schueren C, et al. Among authors: verniers k. Mol Oncol. 2024 Apr 2. doi: 10.1002/1878-0261.13647. Online ahead of print. Mol Oncol. 2024. PMID: 38564603 Free article. Review.
Exploring the cell-free total RNA transcriptome in diffuse large B-cell lymphoma and primary mediastinal B-cell lymphoma patients as biomarker source in blood plasma liquid biopsies.
Decruyenaere P, Giuili E, Verniers K, Anckaert J, De Grove K, Van der Linden M, Deeren D, Van Dorpe J, Offner F, Vandesompele J. Decruyenaere P, et al. Among authors: verniers k. Front Oncol. 2023 Oct 25;13:1221471. doi: 10.3389/fonc.2023.1221471. eCollection 2023. Front Oncol. 2023. PMID: 37954086 Free PMC article.
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.
Vromman M, Anckaert J, Bortoluzzi S, Buratin A, Chen CY, Chu Q, Chuang TJ, Dehghannasiri R, Dieterich C, Dong X, Flicek P, Gaffo E, Gu W, He C, Hoffmann S, Izuogu O, Jackson MS, Jakobi T, Lai EC, Nuytens J, Salzman J, Santibanez-Koref M, Stadler P, Thas O, Vanden Eynde E, Verniers K, Wen G, Westholm J, Yang L, Ye CY, Yigit N, Yuan GH, Zhang J, Zhao F, Vandesompele J, Volders PJ. Vromman M, et al. Among authors: verniers k. Nat Methods. 2023 Aug;20(8):1159-1169. doi: 10.1038/s41592-023-01944-6. Epub 2023 Jul 13. Nat Methods. 2023. PMID: 37443337 Free PMC article.
Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA.
Vermeirssen V, Deleu J, Morlion A, Everaert C, De Wilde J, Anckaert J, Durinck K, Nuytens J, Rishfi M, Speleman F, Van Droogenbroeck H, Verniers K, Baietti MF, Albersen M, Leucci E, Post E, Best MG, Van Maerken T, De Wilde B, Vandesompele J, Decock A. Vermeirssen V, et al. Among authors: verniers k. NAR Cancer. 2022 Nov 28;4(4):zcac037. doi: 10.1093/narcan/zcac037. eCollection 2022 Dec. NAR Cancer. 2022. PMID: 36451702 Free PMC article.
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