Qi J - Search Results

1

Spatiotemporal transcriptome atlas reveals gene regulatory patterns during the organogenesis of the rapid growing bamboo shoots.

Guo J, Luo D, Chen Y, Li F, Gong J, Yu F, Zhang W, Qi J, Guo C. Guo J, et al. Among authors: qi j. New Phytol. 2024 Nov;244(3):1057-1073. doi: 10.1111/nph.20059. Epub 2024 Aug 14. New Phytol. 2024. PMID: 39140996

2

A spatiotemporal atlas of organogenesis in the development of orchid flowers.

Liu C, Leng J, Li Y, Ge T, Li J, Chen Y, Guo C, Qi J. Liu C, et al. Among authors: qi j. Nucleic Acids Res. 2022 Sep 23;50(17):9724-9737. doi: 10.1093/nar/gkac773. Nucleic Acids Res. 2022. PMID: 36095130 Free PMC article.

3

The nearly complete assembly of the Cercis chinensis genome and Fabaceae phylogenomic studies provide insights into new gene evolution.

Li J, Shen J, Wang R, Chen Y, Zhang T, Wang H, Guo C, Qi J. Li J, et al. Among authors: qi j. Plant Commun. 2023 Jan 9;4(1):100422. doi: 10.1016/j.xplc.2022.100422. Epub 2022 Aug 11. Plant Commun. 2023. PMID: 35957520 Free PMC article.

4

STEEL enables high-resolution delineation of spatiotemporal transcriptomic data.

Chen Y, Zhou S, Li M, Zhao F, Qi J. Chen Y, et al. Among authors: qi j. Brief Bioinform. 2023 Mar 19;24(2):bbad068. doi: 10.1093/bib/bbad068. Brief Bioinform. 2023. PMID: 36857617

5

A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families.

Qi X, Kuo LY, Guo C, Li H, Li Z, Qi J, Wang L, Hu Y, Xiang J, Zhang C, Guo J, Huang CH, Ma H. Qi X, et al. Among authors: qi j. Mol Phylogenet Evol. 2018 Oct;127:961-977. doi: 10.1016/j.ympev.2018.06.043. Epub 2018 Jul 5. Mol Phylogenet Evol. 2018. PMID: 29981932

6

Reply to Zwaenepoel et al.: Meeting the Challenges of Detecting Polyploidy Events from Transcriptomic Data.

Wang H, Guo C, Ma H, Qi J. Wang H, et al. Among authors: qi j. Mol Plant. 2019 Feb 4;12(2):137-140. doi: 10.1016/j.molp.2018.12.020. Epub 2018 Dec 29. Mol Plant. 2019. PMID: 30599205 Free article. No abstract available.

7

Amino acid based de Bruijn graph algorithm for identifying complete coding genes from metagenomic and metatranscriptomic short reads.

Liu J, Lian Q, Chen Y, Qi J. Liu J, et al. Among authors: qi j. Nucleic Acids Res. 2019 Mar 18;47(5):e30. doi: 10.1093/nar/gkz017. Nucleic Acids Res. 2019. PMID: 30657979 Free PMC article.

8

Widespread Whole Genome Duplications Contribute to Genome Complexity and Species Diversity in Angiosperms.

Ren R, Wang H, Guo C, Zhang N, Zeng L, Chen Y, Ma H, Qi J. Ren R, et al. Among authors: qi j. Mol Plant. 2018 Mar 5;11(3):414-428. doi: 10.1016/j.molp.2018.01.002. Epub 2018 Jan 6. Mol Plant. 2018. PMID: 29317285 Free article.

9

Tree2GD: a phylogenomic method to detect large-scale gene duplication events.

Chen D, Zhang T, Chen Y, Ma H, Qi J. Chen D, et al. Among authors: qi j. Bioinformatics. 2022 Nov 30;38(23):5317-5321. doi: 10.1093/bioinformatics/btac669. Bioinformatics. 2022. PMID: 36218394

10

inGAP-family: Accurate Detection of Meiotic Recombination Loci and Causal Mutations by Filtering Out Artificial Variants due to Genome Complexities.

Lian Q, Chen Y, Chang F, Fu Y, Qi J. Lian Q, et al. Among authors: qi j. Genomics Proteomics Bioinformatics. 2022 Jun;20(3):524-535. doi: 10.1016/j.gpb.2019.11.014. Epub 2021 Mar 10. Genomics Proteomics Bioinformatics. 2022. PMID: 33711466 Free PMC article.

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