Wei Y - Search Results

1

ThermoLink: Bridging disulfide bonds and enzyme thermostability through database construction and machine learning prediction.

Xu R, Pan Q, Zhu G, Ye Y, Xin M, Wang Z, Wang S, Li W, Wei Y, Guo J, Zheng L. Xu R, et al. Among authors: wei y. Protein Sci. 2024 Sep;33(9):e5097. doi: 10.1002/pro.5097. Protein Sci. 2024. PMID: 39145402

2

Improving protein-ligand docking and screening accuracies by incorporating a scoring function correction term.

Zheng L, Meng J, Jiang K, Lan H, Wang Z, Lin M, Li W, Guo H, Wei Y, Mu Y. Zheng L, et al. Among authors: wei y. Brief Bioinform. 2022 May 13;23(3):bbac051. doi: 10.1093/bib/bbac051. Brief Bioinform. 2022. PMID: 35289359 Free PMC article.

3

A fully differentiable ligand pose optimization framework guided by deep learning and a traditional scoring function.

Wang Z, Zheng L, Wang S, Lin M, Wang Z, Kong AW, Mu Y, Wei Y, Li W. Wang Z, et al. Among authors: wei y. Brief Bioinform. 2023 Jan 19;24(1):bbac520. doi: 10.1093/bib/bbac520. Brief Bioinform. 2023. PMID: 36502369

4

zPoseScore model for accurate and robust protein-ligand docking pose scoring in CASP15.

Shen T, Liu F, Wang Z, Sun J, Bu Y, Meng J, Chen W, Yao K, Mu Y, Li W, Zhao G, Wang S, Wei Y, Zheng L. Shen T, et al. Among authors: wei y. Proteins. 2023 Dec;91(12):1837-1849. doi: 10.1002/prot.26573. Epub 2023 Aug 22. Proteins. 2023. PMID: 37606194

5

A new paradigm for applying deep learning to protein-ligand interaction prediction.

Wang Z, Wang S, Li Y, Guo J, Wei Y, Mu Y, Zheng L, Li W. Wang Z, et al. Among authors: wei y. Brief Bioinform. 2024 Mar 27;25(3):bbae145. doi: 10.1093/bib/bbae145. Brief Bioinform. 2024. PMID: 38581420 Free PMC article.

6

Fully Flexible Molecular Alignment Enables Accurate Ligand Structure Modeling.

Wang Z, Zhou F, Wang Z, Hu Q, Li YQ, Wang S, Wei Y, Zheng L, Li W, Peng X. Wang Z, et al. Among authors: wei y. J Chem Inf Model. 2024 Aug 12;64(15):6205-6215. doi: 10.1021/acs.jcim.4c00669. Epub 2024 Jul 29. J Chem Inf Model. 2024. PMID: 39074901

7

Boosting the predictive performance with aqueous solubility dataset curation.

Meng J, Chen P, Wahib M, Yang M, Zheng L, Wei Y, Feng S, Liu W. Meng J, et al. Among authors: wei y. Sci Data. 2022 Mar 3;9(1):71. doi: 10.1038/s41597-022-01154-3. Sci Data. 2022. PMID: 35241693 Free PMC article.

8

Evaluation of residue-residue contact prediction methods: From retrospective to prospective.

Zhang H, Bei Z, Xi W, Hao M, Ju Z, Saravanan KM, Zhang H, Guo N, Wei Y. Zhang H, et al. Among authors: wei y. PLoS Comput Biol. 2021 May 24;17(5):e1009027. doi: 10.1371/journal.pcbi.1009027. eCollection 2021 May. PLoS Comput Biol. 2021. PMID: 34029314 Free PMC article.

9

COMSAT: Residue contact prediction of transmembrane proteins based on support vector machines and mixed integer linear programming.

Zhang H, Huang Q, Bei Z, Wei Y, Floudas CA. Zhang H, et al. Among authors: wei y. Proteins. 2016 Mar;84(3):332-48. doi: 10.1002/prot.24979. Epub 2016 Jan 20. Proteins. 2016. PMID: 26756402

10

Fibril-Barrel Transitions in Cylindrin Amyloids.

Zhang H, Xi W, Hansmann UHE, Wei Y. Zhang H, et al. Among authors: wei y. J Chem Theory Comput. 2017 Aug 8;13(8):3936-3944. doi: 10.1021/acs.jctc.7b00383. Epub 2017 Jul 17. J Chem Theory Comput. 2017. PMID: 28671829

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