Parida L - Search Results

1

Matrix sketching framework for linear mixed models in association studies.

Burch M, Bose A, Dexter G, Parida L, Drineas P. Burch M, et al. Among authors: parida l. Genome Res. 2024 Oct 11;34(9):1304-1311. doi: 10.1101/gr.279230.124. Genome Res. 2024. PMID: 39231610 Free PMC article.

2

Integrating Linguistics, Social Structure, and Geography to Model Genetic Diversity within India.

Bose A, Platt DE, Parida L, Drineas P, Paschou P. Bose A, et al. Among authors: parida l. Mol Biol Evol. 2021 May 4;38(5):1809-1819. doi: 10.1093/molbev/msaa321. Mol Biol Evol. 2021. PMID: 33481022 Free PMC article.

3

Impact of Clinical and Genomic Factors on COVID-19 Disease Severity.

Dey S, Bose A, Saha S, Chakraborty P, Ghalwash M, Guzm X E N-Sáenz A, Utro F, Ng K, Hu J, Parida L, Sow D. Dey S, et al. Among authors: parida l. AMIA Annu Symp Proc. 2022 Feb 21;2021:378-387. eCollection 2021. AMIA Annu Symp Proc. 2022. PMID: 35308982 Free PMC article.

4

Epidemiological topology data analysis links severe COVID-19 to RAAS and hyperlipidemia associated metabolic syndrome conditions.

Platt D, Bose A, Rhrissorrakrai K, Levovitz C, Parida L. Platt D, et al. Among authors: parida l. Bioinformatics. 2024 Jun 28;40(Suppl 1):i199-i207. doi: 10.1093/bioinformatics/btae235. Bioinformatics. 2024. PMID: 38940159 Free PMC article.

5

Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes.

Armstrong G, Cantrell K, Huang S, McDonald D, Haiminen N, Carrieri AP, Zhu Q, Gonzalez A, McGrath I, Beck KL, Hakim D, Havulinna AS, Méric G, Niiranen T, Lahti L, Salomaa V, Jain M, Inouye M, Swafford AD, Kim HC, Parida L, Vázquez-Baeza Y, Knight R. Armstrong G, et al. Among authors: parida l. Genome Res. 2021 Nov;31(11):2131-2137. doi: 10.1101/gr.275777.121. Epub 2021 Sep 3. Genome Res. 2021. PMID: 34479875 Free PMC article.

6

Haplotype assembly of autotetraploid potato using integer linear programing.

Siragusa E, Haiminen N, Finkers R, Visser R, Parida L. Siragusa E, et al. Among authors: parida l. Bioinformatics. 2019 Sep 15;35(18):3279-3286. doi: 10.1093/bioinformatics/btz060. Bioinformatics. 2019. PMID: 30689725 Free PMC article.

7

Signal enrichment with strain-level resolution in metagenomes using topological data analysis.

Guzmán-Sáenz A, Haiminen N, Basu S, Parida L. Guzmán-Sáenz A, et al. Among authors: parida l. BMC Genomics. 2019 Apr 4;20(Suppl 2):194. doi: 10.1186/s12864-019-5490-y. BMC Genomics. 2019. PMID: 30967115 Free PMC article.

8

MUSE: A MULTI-LOCUS SAMPLING-BASED EPISTASIS ALGORITHM FOR QUANTITATIVE GENETIC TRAIT PREDICTION.

He D, Parida L. He D, et al. Among authors: parida l. Pac Symp Biocomput. 2017;22:426-437. doi: 10.1142/9789813207813_0040. Pac Symp Biocomput. 2017. PMID: 27896995 Free article.

9

iXora: exact haplotype inferencing and trait association.

Utro F, Haiminen N, Livingstone D 3rd, Cornejo OE, Royaert S, Schnell RJ, Motamayor JC, Kuhn DN, Parida L. Utro F, et al. Among authors: parida l. BMC Genet. 2013 Jun 6;14:48. doi: 10.1186/1471-2156-14-48. BMC Genet. 2013. PMID: 23742238 Free PMC article.

10

A common methodological phylogenomics framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clones.

Utro F, Levovitz C, Rhrissorrakrai K, Parida L. Utro F, et al. Among authors: parida l. BMC Genomics. 2021 Nov 16;22(Suppl 5):518. doi: 10.1186/s12864-021-07660-9. BMC Genomics. 2021. PMID: 34789161 Free PMC article.

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