Anderson SN - Search Results

1

Differences in activity and stability drive transposable element variation in tropical and temperate maize.

Ou S, Scheben A, Collins T, Qiu Y, Seetharam AS, Menard CC, Manchanda N, Gent JI, Schatz MC, Anderson SN, Hufford MB, Hirsch CN. Ou S, et al. Among authors: anderson sn. Genome Res. 2024 Sep 20;34(8):1140-1153. doi: 10.1101/gr.278131.123. Genome Res. 2024. PMID: 39251347

2

Whole-genome variation of transposable element insertions in a maize diversity panel.

Qiu Y, O'Connor CH, Della Coletta R, Renk JS, Monnahan PJ, Noshay JM, Liang Z, Gilbert A, Anderson SN, McGaugh SE, Springer NM, Hirsch CN. Qiu Y, et al. Among authors: anderson sn. G3 (Bethesda). 2021 Sep 27;11(10):jkab238. doi: 10.1093/g3journal/jkab238. G3 (Bethesda). 2021. PMID: 34568911 Free PMC article.

3

Transposable elements contribute to dynamic genome content in maize.

Anderson SN, Stitzer MC, Brohammer AB, Zhou P, Noshay JM, O'Connor CH, Hirsch CD, Ross-Ibarra J, Hirsch CN, Springer NM. Anderson SN, et al. Plant J. 2019 Dec;100(5):1052-1065. doi: 10.1111/tpj.14489. Epub 2019 Sep 18. Plant J. 2019. PMID: 31381222 Free article.

4

Monitoring the interplay between transposable element families and DNA methylation in maize.

Noshay JM, Anderson SN, Zhou P, Ji L, Ricci W, Lu Z, Stitzer MC, Crisp PA, Hirsch CN, Zhang X, Schmitz RJ, Springer NM. Noshay JM, et al. Among authors: anderson sn. PLoS Genet. 2019 Sep 9;15(9):e1008291. doi: 10.1371/journal.pgen.1008291. eCollection 2019 Sep. PLoS Genet. 2019. PMID: 31498837 Free PMC article.

5

Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons.

Noshay JM, Marand AP, Anderson SN, Zhou P, Mejia Guerra MK, Lu Z, O'Connor CH, Crisp PA, Hirsch CN, Schmitz RJ, Springer NM. Noshay JM, et al. Among authors: anderson sn. Genetics. 2021 Mar 3;217(1):1-13. doi: 10.1093/genetics/iyaa003. Genetics. 2021. PMID: 33683350 Free PMC article.

6

Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize.

Oka R, Zicola J, Weber B, Anderson SN, Hodgman C, Gent JI, Wesselink JJ, Springer NM, Hoefsloot HCJ, Turck F, Stam M. Oka R, et al. Among authors: anderson sn. Genome Biol. 2017 Jul 21;18(1):137. doi: 10.1186/s13059-017-1273-4. Genome Biol. 2017. PMID: 28732548 Free PMC article.

7

The maize gene maternal derepression of r1 encodes a DNA glycosylase that demethylates DNA and reduces siRNA expression in the endosperm.

Gent JI, Higgins KM, Swentowsky KW, Fu FF, Zeng Y, Kim DW, Dawe RK, Springer NM, Anderson SN. Gent JI, et al. Among authors: anderson sn. Plant Cell. 2022 Sep 27;34(10):3685-3701. doi: 10.1093/plcell/koac199. Plant Cell. 2022. PMID: 35775949 Free PMC article.

8

Genetic and epigenetic variation in transposable element expression responses to abiotic stress in maize.

Liang Z, Anderson SN, Noshay JM, Crisp PA, Enders TA, Springer NM. Liang Z, et al. Among authors: anderson sn. Plant Physiol. 2021 May 27;186(1):420-433. doi: 10.1093/plphys/kiab073. Plant Physiol. 2021. PMID: 33591319 Free PMC article.

9

Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize.

Anderson SN, Stitzer MC, Zhou P, Ross-Ibarra J, Hirsch CD, Springer NM. Anderson SN, et al. G3 (Bethesda). 2019 Nov 5;9(11):3673-3682. doi: 10.1534/g3.119.400431. G3 (Bethesda). 2019. PMID: 31506319 Free PMC article.

10

Widespread imprinting of transposable elements and variable genes in the maize endosperm.

Anderson SN, Zhou P, Higgins K, Brandvain Y, Springer NM. Anderson SN, et al. PLoS Genet. 2021 Apr 8;17(4):e1009491. doi: 10.1371/journal.pgen.1009491. eCollection 2021 Apr. PLoS Genet. 2021. PMID: 33830994 Free PMC article.

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