Deb I - Search Results

1

N1-Methylpseudouridine and pseudouridine modifications modulate mRNA decoding during translation.

Monroe J, Eyler DE, Mitchell L, Deb I, Bojanowski A, Srinivas P, Dunham CM, Roy B, Frank AT, Koutmou KS. Monroe J, et al. Among authors: deb i. Nat Commun. 2024 Sep 16;15(1):8119. doi: 10.1038/s41467-024-51301-0. Nat Commun. 2024. PMID: 39284850 Free PMC article.

2

Quantum Mechanics Helps Uncover Atypical Recognition Features in the Flavin Mononucleotide Riboswitch.

Deb I, Wong H, Tacubao C, Frank AT. Deb I, et al. J Phys Chem B. 2021 Aug 5;125(30):8342-8350. doi: 10.1021/acs.jpcb.1c02702. Epub 2021 Jul 26. J Phys Chem B. 2021. PMID: 34310879

3

Accelerating Rare Dissociative Processes in Biomolecules Using Selectively Scaled MD Simulations.

Deb I, Frank AT. Deb I, et al. J Chem Theory Comput. 2019 Nov 12;15(11):5817-5828. doi: 10.1021/acs.jctc.9b00262. Epub 2019 Oct 4. J Chem Theory Comput. 2019. PMID: 31509413

4

Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N1-methylpseudouridine within RNA duplexes.

Dutta N, Sarzynska J, Deb I, Lahiri A. Dutta N, et al. Among authors: deb i. Phys Chem Chem Phys. 2024 Jan 3;26(2):992-999. doi: 10.1039/d3cp02442c. Phys Chem Chem Phys. 2024. PMID: 38088148

5

Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair.

Deb I, Popenda Ł, Sarzyńska J, Małgowska M, Lahiri A, Gdaniec Z, Kierzek R. Deb I, et al. Sci Rep. 2019 Nov 7;9(1):16278. doi: 10.1038/s41598-019-52637-0. Sci Rep. 2019. PMID: 31700156 Free PMC article.

6

Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives.

Dutta N, Deb I, Sarzynska J, Lahiri A. Dutta N, et al. Among authors: deb i. J Comput Aided Mol Des. 2022 Mar;36(3):205-224. doi: 10.1007/s10822-022-00447-4. Epub 2022 Mar 26. J Comput Aided Mol Des. 2022. PMID: 35338419 Free PMC article.

7

H-Ras induces exuberant de novo dendritic protrusion growth in mature neurons regardless of cell type.

Krüssel S, Deb I, Son S, Ewall G, Chang M, Lee HK, Heo WD, Kwon HB. Krüssel S, et al. Among authors: deb i. iScience. 2024 Jul 18;27(8):110535. doi: 10.1016/j.isci.2024.110535. eCollection 2024 Aug 16. iScience. 2024. PMID: 39220408 Free PMC article.

8

[3+2] Cascade Ring-Closing/Ring-Opening Strategy: Access to N-Indene-Tethered Amino Alcohols.

Mondal I, Roy S, Naskar K, Karmakar S, Chowdhury M, Deb I. Mondal I, et al. Among authors: deb i. Org Lett. 2023 Nov 24;25(46):8199-8204. doi: 10.1021/acs.orglett.3c02975. Epub 2023 Nov 10. Org Lett. 2023. PMID: 37947779

9

How Robust Is the Ligand Binding Transition State?

Bose S, Lotz SD, Deb I, Shuck M, Lee KSS, Dickson A. Bose S, et al. Among authors: deb i. J Am Chem Soc. 2023 Nov 22;145(46):25318-25331. doi: 10.1021/jacs.3c08940. Epub 2023 Nov 9. J Am Chem Soc. 2023. PMID: 37943667 Free PMC article.

10

A condition-tuned unorthodox approach to indole-3-carboxylic acids and anthranilic acids via carbon atom translocation.

Bhowmik A, Naskar K, Roy S, Karmakar S, Sarkar W, Mondal I, Sana A, Deb I. Bhowmik A, et al. Among authors: deb i. Chem Commun (Camb). 2023 Nov 21;59(93):13899-13902. doi: 10.1039/d3cc04443b. Chem Commun (Camb). 2023. PMID: 37934663

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