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Page 1
Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data.
Pakkir Shah AK, Walter A, Ottosson F, Russo F, Navarro-Diaz M, Boldt J, Kalinski JJ, Kontou EE, Elofson J, Polyzois A, González-Marín C, Farrell S, Aggerbeck MR, Pruksatrakul T, Chan N, Wang Y, Pöchhacker M, Brungs C, Cámara B, Caraballo-Rodríguez AM, Cumsille A, de Oliveira F, Dührkop K, El Abiead Y, Geibel C, Graves LG, Hansen M, Heuckeroth S, Knoblauch S, Kostenko A, Kuijpers MCM, Mildau K, Papadopoulos Lambidis S, Portal Gomes PW, Schramm T, Steuer-Lodd K, Stincone P, Tayyab S, Vitale GA, Wagner BC, Xing S, Yazzie MT, Zuffa S, de Kruijff M, Beemelmanns C, Link H, Mayer C, van der Hooft JJJ, Damiani T, Pluskal T, Dorrestein P, Stanstrup J, Schmid R, Wang M, Aron A, Ernst M, Petras D. Pakkir Shah AK, et al. Among authors: van der hooft jjj. Nat Protoc. 2024 Sep 20. doi: 10.1038/s41596-024-01046-3. Online ahead of print. Nat Protoc. 2024. PMID: 39304763 Review.
Veterinary trypanocidal benzoxaboroles are peptidase-activated prodrugs.
Giordani F, Paape D, Vincent IM, Pountain AW, Fernández-Cortés F, Rico E, Zhang N, Morrison LJ, Freund Y, Witty MJ, Peter R, Edwards DY, Wilkes JM, van der Hooft JJJ, Regnault C, Read KD, Horn D, Field MC, Barrett MP. Giordani F, et al. Among authors: van der hooft jjj. PLoS Pathog. 2020 Nov 3;16(11):e1008932. doi: 10.1371/journal.ppat.1008932. eCollection 2020 Nov. PLoS Pathog. 2020. PMID: 33141865 Free PMC article.
The Molecules Gateway: A Homogeneous, Searchable Database of 150k Annotated Molecules from Actinomycetes.
Simone M, Iorio M, Monciardini P, Santini M, Cantù N, Tocchetti A, Serina S, Brunati C, Vernay T, Gentile A, Aracne M, Cozzi M, van der Hooft JJJ, Sosio M, Donadio S, Maffioli SI. Simone M, et al. Among authors: van der hooft jjj. J Nat Prod. 2024 Nov 22;87(11):2615-2628. doi: 10.1021/acs.jnatprod.4c00857. Epub 2024 Oct 25. J Nat Prod. 2024. PMID: 39455415
Metabolic interactions shape a community's phenotype.
Melkonian C, Seidl MF, van der Hooft JJJ, de Vos MGJ. Melkonian C, et al. Among authors: van der hooft jjj. Trends Microbiol. 2022 Jul;30(7):609-611. doi: 10.1016/j.tim.2022.05.001. Epub 2022 May 24. Trends Microbiol. 2022. PMID: 35618541
Microbiome-derived carnitine mimics as previously unknown mediators of gut-brain axis communication.
Hulme H, Meikle LM, Strittmatter N, van der Hooft JJJ, Swales J, Bragg RA, Villar VH, Ormsby MJ, Barnes S, Brown SL, Dexter A, Kamat MT, Komen JC, Walker D, Milling S, Osterweil EK, MacDonald AS, Schofield CJ, Tardito S, Bunch J, Douce G, Edgar JM, Edrada-Ebel R, Goodwin RJA, Burchmore R, Wall DM. Hulme H, et al. Among authors: van der hooft jjj. Sci Adv. 2020 Mar 11;6(11):eaax6328. doi: 10.1126/sciadv.aax6328. eCollection 2020 Mar. Sci Adv. 2020. PMID: 32195337 Free PMC article.
High resolution techniques: general discussion.
Adair E, Afonso C, Bell NGA, Davies AN, Delsuc MA, Godfrey R, Goodacre R, Hawkes JA, Hertkorn N, Jones D, Lameiras P, Le Guennec A, Lubben A, Nilsson M, Paša-Tolić L, Richards J, Rodgers RP, Rüger CP, Schmitt-Kopplin P, Schoenmakers PJ, Sidebottom P, Staerk D, Summerfield S, Uhrín D, van Delft P, van der Hooft JJJ, van Zelst FHM, Zherebker A. Adair E, et al. Among authors: van der hooft jjj, van delft p, van zelst fhm. Faraday Discuss. 2019 Aug 15;218(0):247-267. doi: 10.1039/c9fd90045d. Faraday Discuss. 2019. PMID: 31369012 No abstract available.
Data mining and visualisation: general discussion.
Afonso C, Barrow MP, Davies AN, Delsuc MA, Ebbels T, Fernandez-Lima F, Gauchotte-Lindsay C, Giusti P, Goodacre R, Hertkorn N, Jansen JJ, Jones D, Kew W, Kuhn S, Le Guennec A, Lubben A, Parkinson J, Paša-Tolić L, Rogers S, Rudd TR, Schoenmakers PJ, Sidebottom P, Summerfield S, Tinnevelt GH, Trifirò G, Trygg J, van der Hooft JJJ. Afonso C, et al. Among authors: van der hooft jjj. Faraday Discuss. 2019 Aug 15;218(0):354-371. doi: 10.1039/C9FD90044F. Faraday Discuss. 2019. PMID: 31373341 No abstract available.
108 results