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Page 1
Diverse signatures of convergent evolution in cactus-associated yeasts.
Gonçalves C, Harrison MC, Steenwyk JL, Opulente DA, LaBella AL, Wolters JF, Zhou X, Shen XX, Groenewald M, Hittinger CT, Rokas A. Gonçalves C, et al. Among authors: opulente da. PLoS Biol. 2024 Sep 23;22(9):e3002832. doi: 10.1371/journal.pbio.3002832. eCollection 2024 Sep. PLoS Biol. 2024. PMID: 39312572 Free PMC article.
Genomic factors shaping codon usage across the Saccharomycotina subphylum.
Zavala B, Dineen L, Fisher KJ, Opulente DA, Harrison MC, Wolters JF, Shen XX, Zhou X, Groenewald M, Hittinger CT, Rokas A, LaBella AL. Zavala B, et al. Among authors: opulente da. G3 (Bethesda). 2024 Nov 6;14(11):jkae207. doi: 10.1093/g3journal/jkae207. G3 (Bethesda). 2024. PMID: 39213398 Free PMC article.
A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina.
Groenewald M, Hittinger CT, Bensch K, Opulente DA, Shen XX, Li Y, Liu C, LaBella AL, Zhou X, Limtong S, Jindamorakot S, Gonçalves P, Robert V, Wolfe KH, Rosa CA, Boekhout T, Čadež N, Éter G, Sampaio JP, Lachance MA, Yurkov AM, Daniel HM, Takashima M, Boundy-Mills K, Libkind D, Aoki K, Sugita T, Rokas A. Groenewald M, et al. Among authors: opulente da. Stud Mycol. 2023 Jun;105:1-22. doi: 10.3114/sim.2023.105.01. Epub 2023 May 25. Stud Mycol. 2023. PMID: 38895705 Free PMC article.
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage.
Feng B, Li Y, Liu H, Steenwyk JL, David KT, Tian X, Xu B, Gonçalves C, Opulente DA, LaBella AL, Harrison MC, Wolters JF, Shao S, Chen Z, Fisher KJ, Groenewald M, Hittinger CT, Shen XX, Rokas A, Zhou X, Li Y. Feng B, et al. Among authors: opulente da. bioRxiv [Preprint]. 2024 Jun 6:2024.06.05.597512. doi: 10.1101/2024.06.05.597512. bioRxiv. 2024. PMID: 38895429 Free PMC article. Preprint.
Genomic factors shaping codon usage across the Saccharomycotina subphylum.
Zavala B, Dineen L, Fisher KJ, Opulente DA, Harrison MC, Wolters JF, Shen XX, Zhou X, Groenewald M, Hittinger CT, Rokas A, LaBella AL. Zavala B, et al. Among authors: opulente da. bioRxiv [Preprint]. 2024 May 24:2024.05.23.595506. doi: 10.1101/2024.05.23.595506. bioRxiv. 2024. Update in: G3 (Bethesda). 2024 Nov 6;14(11):jkae207. doi: 10.1093/g3journal/jkae207 PMID: 38826271 Free PMC article. Updated. Preprint.
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts.
Opulente DA, LaBella AL, Harrison MC, Wolters JF, Liu C, Li Y, Kominek J, Steenwyk JL, Stoneman HR, VanDenAvond J, Miller CR, Langdon QK, Silva M, Gonçalves C, Ubbelohde EJ, Li Y, Buh KV, Jarzyna M, Haase MAB, Rosa CA, ČCadež N, Libkind D, DeVirgilio JH, Hulfachor AB, Kurtzman CP, Sampaio JP, Gonçalves P, Zhou X, Shen XX, Groenewald M, Rokas A, Hittinger CT. Opulente DA, et al. Science. 2024 Apr 26;384(6694):eadj4503. doi: 10.1126/science.adj4503. Epub 2024 Apr 26. Science. 2024. PMID: 38662846 Free PMC article.
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon.
Sun L, David KT, Wolters JF, Karlen SD, Gonçalves C, Opulente DA, LaBella AL, Groenewald M, Zhou X, Shen XX, Rokas A, Hittinger CT. Sun L, et al. Among authors: opulente da. Mol Biol Evol. 2024 Apr 2;41(4):msae045. doi: 10.1093/molbev/msae045. Mol Biol Evol. 2024. PMID: 38415839 Free PMC article.
43 results