Shen XX - Search Results

1

Diverse signatures of convergent evolution in cactus-associated yeasts.

Gonçalves C, Harrison MC, Steenwyk JL, Opulente DA, LaBella AL, Wolters JF, Zhou X, Shen XX, Groenewald M, Hittinger CT, Rokas A. Gonçalves C, et al. Among authors: shen xx. PLoS Biol. 2024 Sep 23;22(9):e3002832. doi: 10.1371/journal.pbio.3002832. eCollection 2024 Sep. PLoS Biol. 2024. PMID: 39312572 Free PMC article.

2

A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference.

Shen XX, Salichos L, Rokas A. Shen XX, et al. Genome Biol Evol. 2016 Sep 2;8(8):2565-80. doi: 10.1093/gbe/evw179. Genome Biol Evol. 2016. PMID: 27492233 Free PMC article.

3

Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data.

Shen XX, Zhou X, Kominek J, Kurtzman CP, Hittinger CT, Rokas A. Shen XX, et al. G3 (Bethesda). 2016 Dec 7;6(12):3927-3939. doi: 10.1534/g3.116.034744. G3 (Bethesda). 2016. PMID: 27672114 Free PMC article.

4

Contentious relationships in phylogenomic studies can be driven by a handful of genes.

Shen XX, Hittinger CT, Rokas A. Shen XX, et al. Nat Ecol Evol. 2017 Apr 10;1(5):126. doi: 10.1038/s41559-017-0126. Nat Ecol Evol. 2017. PMID: 28812701 Free PMC article.

5

Selective base excision repair of DNA damage by the non-base-flipping DNA glycosylase AlkC.

Shi R, Mullins EA, Shen XX, Lay KT, Yuen PK, David SS, Rokas A, Eichman BF. Shi R, et al. Among authors: shen xx. EMBO J. 2018 Jan 4;37(1):63-74. doi: 10.15252/embj.201797833. Epub 2017 Oct 20. EMBO J. 2018. PMID: 29054852 Free PMC article.

6

Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets.

Zhou X, Shen XX, Hittinger CT, Rokas A. Zhou X, et al. Among authors: shen xx. Mol Biol Evol. 2018 Feb 1;35(2):486-503. doi: 10.1093/molbev/msx302. Mol Biol Evol. 2018. PMID: 29177474 Free PMC article.

7

Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage.

Gonçalves C, Wisecaver JH, Kominek J, Oom MS, Leandro MJ, Shen XX, Opulente DA, Zhou X, Peris D, Kurtzman CP, Hittinger CT, Rokas A, Gonçalves P. Gonçalves C, et al. Among authors: shen xx. Elife. 2018 Apr 12;7:e33034. doi: 10.7554/eLife.33034. Elife. 2018. PMID: 29648535 Free PMC article.

8

Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.

Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH. Krassowski T, et al. Among authors: shen xx. Nat Commun. 2018 May 14;9(1):1887. doi: 10.1038/s41467-018-04374-7. Nat Commun. 2018. PMID: 29760453 Free PMC article.

9

Structural Biology of the HEAT-Like Repeat Family of DNA Glycosylases.

Shi R, Shen XX, Rokas A, Eichman BF. Shi R, et al. Among authors: shen xx. Bioessays. 2018 Nov;40(11):e1800133. doi: 10.1002/bies.201800133. Epub 2018 Sep 28. Bioessays. 2018. PMID: 30264543 Review.

10

Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts.

Krause DJ, Kominek J, Opulente DA, Shen XX, Zhou X, Langdon QK, DeVirgilio J, Hulfachor AB, Kurtzman CP, Rokas A, Hittinger CT. Krause DJ, et al. Among authors: shen xx. Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):11030-11035. doi: 10.1073/pnas.1806268115. Epub 2018 Oct 8. Proc Natl Acad Sci U S A. 2018. PMID: 30297402 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

205 results

Search Page

Filters