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Selective loss of Y chromosomes in lung adenocarcinoma modulates the tumor immune environment through cancer/testis antigens.
Fischer J, Shutta KH, Chen C, Fanfani V, Saha E, Mandros P, Ben Guebila M, Xiu J, Nieva J, Liu S, Uprety D, Spetzler D, Lopes-Ramos CM, DeMeo D, Quackenbush J. Fischer J, et al. Among authors: demeo d. bioRxiv [Preprint]. 2024 Sep 22:2024.09.19.613876. doi: 10.1101/2024.09.19.613876. bioRxiv. 2024. PMID: 39345481 Free PMC article. Preprint.
Genome-Wide Sex and Gender Differences in Cancer.
Lopes-Ramos CM, Quackenbush J, DeMeo DL. Lopes-Ramos CM, et al. Front Oncol. 2020 Nov 23;10:597788. doi: 10.3389/fonc.2020.597788. eCollection 2020. Front Oncol. 2020. PMID: 33330090 Free PMC article. Review.
Sex-biased Regulation of Extracellular Matrix Genes in COPD.
Lopes-Ramos CM, Shutta KH, Ryu MH, Huang Y, Saha E, Ziniti J, Chase R, Hobbs BD, Yun JH, Castaldi P, Hersh CP, Glass K, Silverman EK, Quackenbush J, DeMeo DL. Lopes-Ramos CM, et al. Among authors: demeo dl. Am J Respir Cell Mol Biol. 2024 Aug 5;72(1):72-81. doi: 10.1165/rcmb.2024-0226OC. Online ahead of print. Am J Respir Cell Mol Biol. 2024. PMID: 39102858
Gene regulatory networks reveal sex difference in lung adenocarcinoma.
Saha E, Ben Guebila M, Fanfani V, Fischer J, Shutta KH, Mandros P, DeMeo DL, Quackenbush J, Lopes-Ramos CM. Saha E, et al. Biol Sex Differ. 2024 Aug 6;15(1):62. doi: 10.1186/s13293-024-00634-y. Biol Sex Differ. 2024. PMID: 39107837 Free PMC article.
Bayesian inference of sample-specific coexpression networks.
Saha E, Fanfani V, Mandros P, Ben Guebila M, Fischer J, Shutta KH, DeMeo DL, Lopes-Ramos CM, Quackenbush J. Saha E, et al. Genome Res. 2024 Oct 11;34(9):1397-1410. doi: 10.1101/gr.279117.124. Genome Res. 2024. PMID: 39134413 Free PMC article.
Bipartite Community Structure of eQTLs.
Platig J, Castaldi PJ, DeMeo D, Quackenbush J. Platig J, et al. Among authors: demeo d. PLoS Comput Biol. 2016 Sep 12;12(9):e1005033. doi: 10.1371/journal.pcbi.1005033. eCollection 2016 Sep. PLoS Comput Biol. 2016. PMID: 27618581 Free PMC article.
374 results