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Page 1
Frequency and spectrum of mutations in human sperm measured using duplex sequencing correlate with trio-based de novo mutation analyses.
Axelsson J, LeBlanc D, Shojaeisaadi H, Meier MJ, Fitzgerald DM, Nachmanson D, Carlson J, Golubeva A, Higgins J, Smith T, Lo FY, Pilsner R, Williams A, Salk J, Marchetti F, Yauk C. Axelsson J, et al. Among authors: salk j. Sci Rep. 2024 Oct 8;14(1):23134. doi: 10.1038/s41598-024-73587-2. Sci Rep. 2024. PMID: 39379474 Free PMC article.
Duplex sequencing provides detailed characterization of mutation frequencies and spectra in the bone marrow of MutaMouse males exposed to procarbazine hydrochloride.
Dodge AE, LeBlanc DPM, Zhou G, Williams A, Meier MJ, Van P, Lo FY, Valentine Iii CC, Salk JJ, Yauk CL, Marchetti F. Dodge AE, et al. Among authors: salk jj. Arch Toxicol. 2023 Aug;97(8):2245-2259. doi: 10.1007/s00204-023-03527-y. Epub 2023 Jun 21. Arch Toxicol. 2023. PMID: 37341741 Free PMC article.
Ultra-Sensitive TP53 Sequencing for Cancer Detection Reveals Progressive Clonal Selection in Normal Tissue over a Century of Human Lifespan.
Salk JJ, Loubet-Senear K, Maritschnegg E, Valentine CC, Williams LN, Higgins JE, Horvat R, Vanderstichele A, Nachmanson D, Baker KT, Emond MJ, Loter E, Tretiakova M, Soussi T, Loeb LA, Zeillinger R, Speiser P, Risques RA. Salk JJ, et al. Cell Rep. 2019 Jul 2;28(1):132-144.e3. doi: 10.1016/j.celrep.2019.05.109. Cell Rep. 2019. PMID: 31269435 Free PMC article.
Adopting Duplex Sequencing™ Technology for Genetic Toxicity Testing: A Proof-of-Concept Mutagenesis Experiment with N-Ethyl-N-Nitrosourea (ENU)-Exposed Rats.
Smith-Roe SL, Hobbs CA, Hull V, Auman JT, Recio L, Streicker MA, Rivas MV, Pratt GA, Lo FY, Higgins JE, Schmidt EK, Williams LN, Nachmanson D, Valentine CC 3rd, Salk JJ, Witt KL. Smith-Roe SL, et al. Among authors: salk jj. bioRxiv [Preprint]. 2023 May 9:2023.05.08.539833. doi: 10.1101/2023.05.08.539833. bioRxiv. 2023. Update in: Mutat Res Genet Toxicol Environ Mutagen. 2023 Oct;891:503669. doi: 10.1016/j.mrgentox.2023.503669. PMID: 37214853 Free PMC article. Updated. Preprint.
Targeted genome fragmentation with CRISPR/Cas9 enables fast and efficient enrichment of small genomic regions and ultra-accurate sequencing with low DNA input (CRISPR-DS).
Nachmanson D, Lian S, Schmidt EK, Hipp MJ, Baker KT, Zhang Y, Tretiakova M, Loubet-Senear K, Kohrn BF, Salk JJ, Kennedy SR, Risques RA. Nachmanson D, et al. Among authors: salk jj. Genome Res. 2018 Oct;28(10):1589-1599. doi: 10.1101/gr.235291.118. Epub 2018 Sep 19. Genome Res. 2018. PMID: 30232196 Free PMC article.
Dose-related Mutagenic and Clastogenic Effects of Benzo[b]fluoranthene in Mouse Somatic Tissues Detected by Duplex Sequencing and the Micronucleus Assay.
Schuster DM, LeBlanc DPM, Zhou G, Meier MJ, Dodge AE, White PA, Long AS, Williams A, Hobbs C, Diesing A, Smith-Roe SL, Salk JJ, Marchetti F, Yauk CL. Schuster DM, et al. Among authors: salk jj. bioRxiv [Preprint]. 2024 Jul 26:2024.07.26.605228. doi: 10.1101/2024.07.26.605228. bioRxiv. 2024. PMID: 39211269 Free PMC article. Preprint.
Quantification of measurable residual disease using duplex sequencing in adults with acute myeloid leukemia.
Dillon LW, Higgins J, Nasif H, Othus M, Beppu L, Smith TH, Schmidt E, Valentine CC 3rd, Salk JJ, Wood BL, Erba HP, Radich JP, Hourigan CS. Dillon LW, et al. Among authors: salk jj. medRxiv [Preprint]. 2023 Mar 27:2023.03.26.23287367. doi: 10.1101/2023.03.26.23287367. medRxiv. 2023. Update in: Haematologica. 2024 Feb 01;109(2):401-410. doi: 10.3324/haematol.2023.283520. PMID: 37034683 Free PMC article. Updated. Preprint.
Detecting ultralow-frequency mutations by Duplex Sequencing.
Kennedy SR, Schmitt MW, Fox EJ, Kohrn BF, Salk JJ, Ahn EH, Prindle MJ, Kuong KJ, Shen JC, Risques RA, Loeb LA. Kennedy SR, et al. Among authors: salk jj. Nat Protoc. 2014 Nov;9(11):2586-606. doi: 10.1038/nprot.2014.170. Epub 2014 Oct 9. Nat Protoc. 2014. PMID: 25299156 Free PMC article.
189 results