Li SC - Search Results

1

Spatially Informed Graph Structure Learning Extracts Insights from Spatial Transcriptomics.

Nie W, Yu Y, Wang X, Wang R, Li SC. Nie W, et al. Among authors: li sc. Adv Sci (Weinh). 2024 Oct 9:e2403572. doi: 10.1002/advs.202403572. Online ahead of print. Adv Sci (Weinh). 2024. PMID: 39382177

2

Mining bacterial NGS data vastly expands the complete genomes of temperate phages.

Zhang X, Wang R, Xie X, Hu Y, Wang J, Sun Q, Feng X, Lin W, Tong S, Yan W, Wen H, Wang M, Zhai S, Sun C, Wang F, Niu Q, Kropinski AM, Cui Y, Jiang X, Peng S, Li S, Tong Y. Zhang X, et al. NAR Genom Bioinform. 2022 Aug 3;4(3):lqac057. doi: 10.1093/nargab/lqac057. eCollection 2022 Sep. NAR Genom Bioinform. 2022. PMID: 35937545 Free PMC article.

3

Nucleophilicity Prediction Using Graph Neural Networks.

Nie W, Liu D, Li S, Yu H, Fu Y. Nie W, et al. J Chem Inf Model. 2022 Sep 26;62(18):4319-4328. doi: 10.1021/acs.jcim.2c00696. Epub 2022 Sep 12. J Chem Inf Model. 2022. PMID: 36097394

4

TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization.

Wang X, Chen L, Liu W, Zhang Y, Liu D, Zhou C, Shi S, Dong J, Lai Z, Zhao B, Zhang W, Cheng H, Li S. Wang X, et al. Nucleic Acids Res. 2023 Jan 6;51(D1):D1417-D1424. doi: 10.1093/nar/gkac1006. Nucleic Acids Res. 2023. PMID: 36399488 Free PMC article.

5

PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations.

Wang RH, Yang S, Liu Z, Zhang Y, Wang X, Xu Z, Wang J, Li SC. Wang RH, et al. Among authors: li sc. Nucleic Acids Res. 2024 Jan 5;52(D1):D756-D761. doi: 10.1093/nar/gkad979. Nucleic Acids Res. 2024. PMID: 37904614 Free PMC article.

6

SPROUT: spectral sparsification helps restore the spatial structure at single-cell resolution.

Wang J, Li S, Chen L, Li SC. Wang J, et al. Among authors: li sc, li s. NAR Genom Bioinform. 2022 Sep 15;4(3):lqac069. doi: 10.1093/nargab/lqac069. eCollection 2022 Sep. NAR Genom Bioinform. 2022. PMID: 36128423 Free PMC article.

7

Probabilistic tensor decomposition extracts better latent embeddings from single-cell multiomic data.

Wang RH, Wang J, Li SC. Wang RH, et al. Among authors: li sc. Nucleic Acids Res. 2023 Aug 25;51(15):e81. doi: 10.1093/nar/gkad570. Nucleic Acids Res. 2023. PMID: 37403780 Free PMC article.

8

SCDevDB: A Database for Insights Into Single-Cell Gene Expression Profiles During Human Developmental Processes.

Wang Z, Feng X, Li SC. Wang Z, et al. Among authors: li sc. Front Genet. 2019 Sep 26;10:903. doi: 10.3389/fgene.2019.00903. eCollection 2019. Front Genet. 2019. PMID: 31611909 Free PMC article.

9

Resolving complex structures at oncovirus integration loci with conjugate graph.

Jia W, Xu C, Li SC. Jia W, et al. Among authors: li sc. Brief Bioinform. 2021 Nov 5;22(6):bbab359. doi: 10.1093/bib/bbab359. Brief Bioinform. 2021. PMID: 34463709

10

Incorporating cell hierarchy to decipher the functional diversity of single cells.

Chen L, Li SC. Chen L, et al. Among authors: li sc. Nucleic Acids Res. 2023 Jan 25;51(2):e9. doi: 10.1093/nar/gkac1044. Nucleic Acids Res. 2023. PMID: 36373664 Free PMC article.

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