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Identification of kidney cell types in scRNA-seq and snRNA-seq data using machine learning algorithms.
Tisch A, Madapoosi S, Blough S, Rosa J, Eddy S, Mariani L, Naik A, Limonte C, McCown P, Menon R, Rosas SE, Parikh CR, Kretzler M, Mahfouz A, Alakwaa F; Kidney Precision Medicine Project (KPMP). Tisch A, et al. Among authors: mahfouz a. Heliyon. 2024 Sep 27;10(19):e38567. doi: 10.1016/j.heliyon.2024.e38567. eCollection 2024 Oct 15. Heliyon. 2024. PMID: 39403515 Free PMC article.
snRNA-seq analysis in multinucleated myogenic FSHD cells identifies heterogeneous FSHD transcriptome signatures associated with embryonic-like program activation and oxidative stress-induced apoptosis.
Zheng D, Wondergem A, Kloet S, Willemsen I, Balog J, Tapscott SJ, Mahfouz A, van den Heuvel A, van der Maarel SM. Zheng D, et al. Among authors: mahfouz a. Hum Mol Genet. 2024 Jan 20;33(3):284-298. doi: 10.1093/hmg/ddad186. Hum Mol Genet. 2024. PMID: 37934801 Free PMC article.
Benchmarking variational AutoEncoders on cancer transcriptomics data.
Eltager M, Abdelaal T, Charrout M, Mahfouz A, Reinders MJT, Makrodimitris S. Eltager M, et al. Among authors: mahfouz a. PLoS One. 2023 Oct 5;18(10):e0292126. doi: 10.1371/journal.pone.0292126. eCollection 2023. PLoS One. 2023. PMID: 37796856 Free PMC article.
Spatial dynamic metabolomics identifies metabolic cell fate trajectories in human kidney differentiation.
Wang G, Heijs B, Kostidis S, Rietjens RGJ, Koning M, Yuan L, Tiemeier GL, Mahfouz A, Dumas SJ, Giera M, Kers J, Chuva de Sousa Lopes SM, van den Berg CW, van den Berg BM, Rabelink TJ. Wang G, et al. Among authors: mahfouz a. Cell Stem Cell. 2022 Nov 3;29(11):1580-1593.e7. doi: 10.1016/j.stem.2022.10.008. Cell Stem Cell. 2022. PMID: 36332571 Free article.
Transcriptional and cell type profiles of cortical brain regions showing ultradian cortisol rhythm dependent responses to emotional face stimulation.
Habets PC, Kalafatakis K, Dzyubachyk O, van der Werff SJA, Keo A, Thakrar J, Mahfouz A, Pereira AM, Russell GM, Lightman SL, Meijer OC. Habets PC, et al. Among authors: mahfouz a. Neurobiol Stress. 2023 Jan 4;22:100514. doi: 10.1016/j.ynstr.2023.100514. eCollection 2023 Jan. Neurobiol Stress. 2023. PMID: 36660181 Free PMC article.
Combined plasma protein and memory T cell profiling discern IBD-patient-immunotypes related to intestinal disease and treatment outcomes.
Heredia M, Charrout M, Klomberg RCW, Aardoom MA, Jongsma MME, Kemos P, Hulleman-van Haaften DH, Tuk B, van Berkel LA, Bley Folly B, Calado B, Nugteren S, Simons-Oosterhuis Y, Doukas M, Sanders MA, van Beek G, Ruemmele FM, Croft NM, Mahfouz A, Reinders MJT, Escher JC, de Ridder L, Samsom JN. Heredia M, et al. Among authors: mahfouz a. Mucosal Immunol. 2024 Sep 26:S1933-0219(24)00097-7. doi: 10.1016/j.mucimm.2024.09.004. Online ahead of print. Mucosal Immunol. 2024. PMID: 39332767 Free article.
332 results